Factsheet for HORVU0Hr1G013850.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G057270.1
HORVU7Hr1G012370.2
HORVU7Hr1G074890.6
HORVU7Hr1G076300.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	HORVU7Hr1G076300.3	AT1G08480.1	12970493
AT5G66760.1	HORVU7Hr1G012370.2	AT1G47420.1	12970493
AT5G66760.1	HORVU5Hr1G057270.1	AT3G27380.1	12970493
AT5G66760.1	HORVU7Hr1G074890.6	AT3G27380.1	12970493
AT5G66760.1	HORVU5Hr1G057270.1	AT5G40650.1	12970493
AT5G66760.1	HORVU7Hr1G074890.6	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	98.36	86.8
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	98.36	86.8
TraesCS5D01G420100.1	Wheat	mitochondrion	93.07	86.29
HORVU2Hr1G061080.1	Barley	cytosol, peroxisome	17.15	85.45
GSMUA_Achr7P00810_001	Banana	cytosol	91.06	83.31
KXG34367	Sorghum	mitochondrion	93.43	82.71
Zm00001d007966_P001	Maize	mitochondrion	93.25	82.55
EER90804	Sorghum	mitochondrion	92.15	81.45
Os07t0134800-01	Rice	mitochondrion	92.7	80.63
HORVU2Hr1G061040.10	Barley	mitochondrion	77.01	79.77
PGSC0003DMT400038576	Potato	mitochondrion	91.61	79.68
Solyc02g085350.2.1	Tomato	mitochondrion	91.06	79.33
CDY57124	Canola	mitochondrion	90.33	78.95
Bra012100.1-P	Field mustard	mitochondrion	89.78	78.85
CDY30754	Canola	mitochondrion	90.15	78.79
CDY53847	Canola	mitochondrion	90.15	78.79
CDX81369	Canola	mitochondrion	90.15	78.66
AT5G66760.1	Thale cress	mitochondrion	90.88	78.55
CDY49839	Canola	mitochondrion	89.96	78.5
KRH69929	Soybean	mitochondrion	89.78	77.6
KRH28665	Soybean	mitochondrion	88.32	76.83
KRH76805	Soybean	mitochondrion	88.14	76.67
Bra024466.1-P	Field mustard	mitochondrion	87.59	75.95
CDY36482	Canola	mitochondrion	87.23	75.51
CDY29234	Canola	mitochondrion	87.23	75.51
AT2G18450.1	Thale cress	mitochondrion	86.86	75.32
Zm00001d018758_P001	Maize	mitochondrion	83.39	73.35
VIT_04s0023g01650.t01	Wine grape	mitochondrion	89.6	73.28
HORVU6Hr1G017860.12	Barley	plastid	29.56	25.08

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	UniProt:A0A287E139	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf
InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114
EnsemblPlantsGene:HORVU0Hr1G013850	EnsemblPlants:HORVU0Hr1G013850.1	InterPro:IPR027477	InterPro:IPR036188	PFAM:PF00890	PFAM:PF02910
PIRSF:PIRSF000171	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425
InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI000B478563
SEG:seg	:	:	:	:	:

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A287E139]

Coordinates

chrchrUn:+:77947186..77950840

Molecular Weight (calculated)

60540.8 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.395

Length

548 amino acids

Sequence
(BLAST)

001: LIGSSSGGIN AALGNMSEDD WRWHMYDTVK GSDWLGDQDA IQYMCREAPK AVIELENYGL PFSRTEDGKI YQRAFGGQSL DFGKGGQAYR CACAADRTGH
101: AMLHTLYGQA MKHNTQFFVE YFALDLIMDK EGTCQGVIAL NMEDGTLHRF RSTNTILATG GYGRAYFSAT SAHTCTGDGN AMVARAGLPL QDLEFVQFHP
201: TGIYGAGCLI TEGSRGEGGI LRNSEGERFM ERYAPTAKDL ASRDVVSRSM TMEIREGRGV GPLKDHLYLH LNHLPPEVLK ERLPGISETA AIFAGVDVTK
301: EPIPVLPTVH YNMGGIPTNY HGQVVDIKGD NPDTIIPGLM AAGEAACASV HGANRLGANS LLDIVVFGRA CANRVAEISK PGETQKPLEK DAGEKTIAWL
401: DKLRNANGSL PTSNIRLNMQ RIMQNNAAVF RTQETLTEGC KLISEAQKSF HDVKLSDRSL IWNSDLIETI ELENLLINAC ITMHSAEARQ ESRGAHARED
501: FKTRDDDKWM KHSLGYWEDE KVRLEYRPVH MNTLDDEVET FPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.