Factsheet for TraesCS5B01G414900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G298400.1
TraesCS2B01G314900.1
TraesCS2D01G296500.1
TraesCS4A01G418100.1
TraesCS7A01G314000.1
TraesCS7A01G319300.1
TraesCS7B01G214900.1
TraesCS7B01G220100.1
TraesCS7D01G064400.1
TraesCS7D01G311200.1
TraesCS7D01G315800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	TraesCS7A01G319300.1	AT1G08480.1	12970493
AT5G66760.1	TraesCS7B01G220100.1	AT1G08480.1	12970493
AT5G66760.1	TraesCS7D01G315800.1	AT1G08480.1	12970493
AT5G66760.1	TraesCS2A01G298400.1	AT1G47420.1	12970493
AT5G66760.1	TraesCS2B01G314900.1	AT1G47420.1	12970493
AT5G66760.1	TraesCS2D01G296500.1	AT1G47420.1	12970493
AT5G66760.1	TraesCS4A01G418100.1	AT1G47420.1	12970493
AT5G66760.1	TraesCS7D01G064400.1	AT1G47420.1	12970493
AT5G66760.1	TraesCS7A01G314000.1	AT3G27380.1	12970493
AT5G66760.1	TraesCS7B01G214900.1	AT3G27380.1	12970493
AT5G66760.1	TraesCS7D01G311200.1	AT3G27380.1	12970493
AT5G66760.1	TraesCS7A01G314000.1	AT5G40650.1	12970493
AT5G66760.1	TraesCS7B01G214900.1	AT5G40650.1	12970493
AT5G66760.1	TraesCS7D01G311200.1	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G420100.1	Wheat	mitochondrion	95.01	99.83
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	99.68	99.68
HORVU0Hr1G013850.1	Barley	cytosol	86.8	98.36
KXG34367	Sorghum	mitochondrion	93.08	93.38
Zm00001d007966_P001	Maize	mitochondrion	92.91	93.21
EER90804	Sorghum	mitochondrion	92.91	93.06
TraesCS2B01G267100.1	Wheat	mitochondrion	84.7	92.12
GSMUA_Achr7P00810_001	Banana	cytosol	88.57	91.82
Os07t0134800-01	Rice	mitochondrion	91.63	90.32
Solyc02g085350.2.1	Tomato	mitochondrion	89.37	88.24
CDY57124	Canola	mitochondrion	89.05	88.2
Bra012100.1-P	Field mustard	mitochondrion	88.57	88.14
PGSC0003DMT400038576	Potato	mitochondrion	89.37	88.1
CDY53847	Canola	mitochondrion	88.89	88.04
CDY30754	Canola	mitochondrion	88.89	88.04
CDX81369	Canola	mitochondrion	88.89	87.9
CDY49839	Canola	mitochondrion	88.73	87.74
AT5G66760.1	Thale cress	mitochondrion	89.21	87.38
KRH69929	Soybean	mitochondrion	87.76	85.96
KRH28665	Soybean	mitochondrion	86.8	85.56
KRH76805	Soybean	mitochondrion	86.63	85.4
Bra024466.1-P	Field mustard	mitochondrion	86.8	85.28
CDY29234	Canola	mitochondrion	86.47	84.83
CDY36482	Canola	mitochondrion	86.31	84.68
Zm00001d018758_P001	Maize	mitochondrion	84.22	83.95
AT2G18450.1	Thale cress	mitochondrion	85.02	83.54
VIT_04s0023g01650.t01	Wine grape	mitochondrion	88.08	81.64
TraesCS6B01G127300.1	Wheat	plastid	29.31	28.39

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS
InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016627	GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188
PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51
SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg
TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	EnsemblPlantsGene:TraesCS5B01G414900	EnsemblPlants:TraesCS5B01G414900.1	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:589123511..589128872

Molecular Weight (calculated)

68293.0 Da

IEP (calculated)

6.549

GRAVY (calculated)

-0.362

Length

621 amino acids

Sequence
(BLAST)

001: MWRSRVSRGL REAKAAAAAA SRRFSTTSSY TVVDHTYDAV VVGAGGAGLR AAIGLSEHGF NTACITKLFP TRSHTVAAQG GINAALGNMS EDDWRWHMYD
101: TVKGSDWLGD QDAIQYMCRE APKAVIELEN YGLPFSRTED GKIYQRAFGG QSLDFGKGGQ AYRCACAADR TGHAMLHTLY GQAMKHNTQF FVEYFALDLI
201: MDKEGTCQGV IALNMEDGTL HRFRSTNTIL ATGGYGRAYF SATSAHTCTG DGNAMVARAG LPLQDLEFVQ FHPTGIYGAG CLITEGSRGE GGILRNSEGE
301: RFMERYAPTA KDLASRDVVS RSMTMEIREG RGVGPMKDHL YLHLNHLPPE VLKERLPGIS ETAAIFAGVD VTKEPIPVLP TVHYNMGGIP TNYHGQVVDI
401: KGDNPDTVIP GLMAAGEAAC ASVHGANRLG ANSLLDIVVF GRACANRVAE ISKPGETQKP LEKDAGEKTI AWLDKLRNAN GSLPTSKIRL NMQRIMQNNA
501: AVFRTQETLT EGCELISEAQ KSFHDVKLSD RSLIWNSDLI ETIELENLLI NACITMHSAE ARQESRGAHA REDFKTRDDD KWMKHSLGYW EDEKVRLEYR
601: PVHMNTLDDE VETFPPKARV Y

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.