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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 extracellular: 20408568
mitochondrion: 22607058
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
msms PMID: 22607058 doi
D Dahal, BP Mooney, KJ Newton
Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66760.1 Zm00001d035054_P002 AT1G08480.1 12970493
AT5G66760.1 Zm00001d049691_P002 AT1G08480.1 12970493
AT5G66760.1 Zm00001d013526_P002 AT1G47420.1 12970493
AT5G66760.1 Zm00001d033554_P001 AT1G47420.1 12970493
AT5G66760.1 Zm00001d011333_P001 AT3G27380.1 12970493
AT5G66760.1 Zm00001d035136_P001 AT3G27380.1 12970493
AT5G66760.1 Zm00001d045148_P001 AT3G27380.1 12970493
AT5G66760.1 Zm00001d049649_P001 AT3G27380.1 12970493
AT5G66760.1 Zm00001d011333_P001 AT5G40650.1 12970493
AT5G66760.1 Zm00001d035136_P001 AT5G40650.1 12970493
AT5G66760.1 Zm00001d045148_P001 AT5G40650.1 12970493
AT5G66760.1 Zm00001d049649_P001 AT5G40650.1 12970493
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG34367 Sorghum mitochondrion 99.19 99.19
GSMUA_Achr7P00810_001 Banana cytosol 90.63 93.66
HORVU0Hr1G013850.1 Barley cytosol 82.55 93.25
TraesCS5B01G414900.1 Wheat mitochondrion, plastid 93.21 92.91
TraesCS5A01G411200.1 Wheat golgi, mitochondrion 92.89 92.59
TraesCS5D01G420100.1 Wheat mitochondrion 88.37 92.56
Os07t0134800-01 Rice mitochondrion 93.54 91.9
Zm00001d008855_P001 Maize cytosol, mitochondrion, peroxisome 33.12 90.71
Zm00001d018758_P001 Maize mitochondrion 90.15 89.57
Solyc02g085350.2.1 Tomato mitochondrion 90.63 89.19
PGSC0003DMT400038576 Potato mitochondrion 90.63 89.05
CDY57124 Canola mitochondrion 89.34 88.2
AT5G66760.1 Thale cress mitochondrion 90.15 88.01
Bra012100.1-P Field mustard mitochondrion 88.69 87.98
CDX81369 Canola mitochondrion 89.18 87.9
CDY53847 Canola mitochondrion 89.01 87.88
CDY30754 Canola mitochondrion 89.01 87.88
CDY49839 Canola mitochondrion 89.01 87.74
KRH69929 Soybean mitochondrion 89.34 87.22
KRH76805 Soybean mitochondrion 88.69 87.14
KRH28665 Soybean mitochondrion 88.69 87.14
Bra024466.1-P Field mustard mitochondrion 86.75 84.97
CDY29234 Canola mitochondrion 86.43 84.52
CDY36482 Canola mitochondrion 86.43 84.52
AT2G18450.1 Thale cress mitochondrion 85.78 84.02
VIT_04s0023g01650.t01 Wine grape mitochondrion 89.98 83.13
Zm00001d014927_P001 Maize cytosol, mitochondrion, peroxisome 15.99 77.34
Zm00001d029250_P001 Maize cytosol 9.21 77.03
Zm00001d038502_P001 Maize cytosol 18.9 53.67
Zm00001d025385_P001 Maize cytosol 10.02 47.69
Zm00001d029316_P001 Maize cytosol 12.6 40.41
Zm00001d015183_P002 Maize plastid 29.73 27.54
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.20.58.100EntrezGene:100280324
MapMan:2.3.6.1.1Gene3D:3.50.50.60Gene3D:3.90.700.10Gene3D:4.10.80.40UniProt:B8A372EMBL:BT056014
InterPro:FAD-binding_2InterPro:FAD/NAD-bd_sfInterPro:FRD_SDH_FAD_BSInterPro:Fum_R/Succ_DH_flav-like_C_sfInterPro:Fum_Rdtase/Succ_DH_flav-like_CGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0006091GO:GO:0006099GO:GO:0008150
GO:GO:0008152GO:GO:0008177GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0016627
GO:GO:0022900GO:GO:0050660GO:GO:0055114InterPro:IPR027477InterPro:IPR036188ProteinID:ONM28082.1
ProteinID:ONM28083.1PFAM:PF00890PFAM:PF02910PIRSF:PIRSF000171ScanProsite:PS00504PANTHER:PTHR11632
PANTHER:PTHR11632:SF51SUPFAM:SSF46977SUPFAM:SSF51905SUPFAM:SSF56425InterPro:Succ_DH/fumarate_Rdtase_cat_sfInterPro:Succ_DH_flav_su_fwd
InterPro:Succ_Dhase_FrdA_GnegTIGRFAMs:TIGR01812TIGRFAMs:TIGR01816UniParc:UPI000191770FEnsemblPlantsGene:Zm00001d007966EnsemblPlants:Zm00001d007966_P001
EnsemblPlants:Zm00001d007966_T001SEG:seg::::
Description
succinate dehydrogenase4 succinate dehydrogenase4
Coordinates
chr2:-:244311542..244316929
Molecular Weight (calculated)
68000.7 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.336
Length
619 amino acids
Sequence
(BLAST)
001: MWRSCVSRGL SRAKASASRL LSTASSSYTV VDHTYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMSED DWRWHMYDTV
101: KGSDWLGDQD SIQYMCREAP KAVIELENYG LPFSRTEEGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HAMLHTLYGQ AMKHNTQFFV EYFALDLLMD
201: NDGKCQGVIA LNMEDGTLHR FRASNTILAT GGYGRAYFSA TSAHTCTGDG NAMVARAGLP LQDLEFVQFH PTGIYGAGCL ITEGSRGEGG ILRNSEGERF
301: MERYAPTAKD LASRDVVSRS MTMEIREGRG VGPLKDHIYL HLNHLPPEVL KERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN YHGEVVDIKG
401: NNPDAVIPGL MAAGEAACAS VHGANRLGAN SLLDIVVFGR ACANRVADIS KPGEKQKPLE KDAGEKTIAW LDKLRNANGS LPTSKIRLNM QRVMQNNAAV
501: FRTQETLEEG CELISKTWES FHDVKLSDRS LIWNSDLIET LELENLLINA CITMYSAEAR KESRGAHARE DFTTRDDEKW MKHSLGYWEN EKVRLAYRPV
601: HMKTLDDEVE SFPPKARVY
Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
Arabidopsis Description
SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.