Factsheet for Zm00001d029250_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Zm00001d035054_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d049691_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d013526_P002	AT1G47420.1	12970493
AT5G66760.1	Zm00001d033554_P001	AT1G47420.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	72.97	42.19
Zm00001d029316_P001	Maize	cytosol	89.19	34.2
Zm00001d038502_P001	Maize	cytosol	74.32	25.23
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	71.62	23.45
HORVU2Hr1G061040.10	Barley	mitochondrion	77.03	10.78
TraesCS2B01G267100.1	Wheat	mitochondrion	77.03	9.98
GSMUA_Achr7P00810_001	Banana	cytosol	75.68	9.35
TraesCS2A01G255100.1	Wheat	plastid	77.03	9.21
Zm00001d007966_P001	Maize	mitochondrion	77.03	9.21
Zm00001d018758_P001	Maize	mitochondrion	77.03	9.15
Bra012100.1-P	Field mustard	mitochondrion	77.03	9.13
CDY53847	Canola	mitochondrion	77.03	9.09
CDY57124	Canola	mitochondrion	77.03	9.09
CDY30754	Canola	mitochondrion	77.03	9.09
CDY49839	Canola	mitochondrion	77.03	9.08
Solyc02g085350.2.1	Tomato	mitochondrion	77.03	9.06
Os07t0134800-01	Rice	mitochondrion	77.03	9.05
PGSC0003DMT400038576	Potato	mitochondrion	77.03	9.05
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	75.68	9.05
AT5G66760.1	Thale cress	mitochondrion	77.03	8.99
CDX81369	Canola	mitochondrion	75.68	8.92
KRH76805	Soybean	mitochondrion	75.68	8.89
KRH28665	Soybean	mitochondrion	75.68	8.89
KRH69929	Soybean	mitochondrion	75.68	8.83
Bra024466.1-P	Field mustard	mitochondrion	74.32	8.7
CDY36482	Canola	mitochondrion	74.32	8.69
CDY29234	Canola	mitochondrion	74.32	8.69
VIT_04s0023g01650.t01	Wine grape	mitochondrion	77.03	8.51
AT2G18450.1	Thale cress	mitochondrion	71.62	8.39
Zm00001d015183_P002	Maize	plastid	22.97	2.54
Zm00001d025385_P001	Maize	cytosol	4.05	2.31

Protein Annotations

EnsemblPlants:Zm00001d029250_P001	EnsemblPlants:Zm00001d029250_T001	EnsemblPlantsGene:Zm00001d029250	Gene3D:3.90.700.10	InterPro:FAD-binding_2	InterPro:IPR027477
InterPro:Succ_DH/fumarate_Rdtase_cat_sf	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	PFAM:PF00890	ProteinID:ONL98313.1	SUPFAM:SSF56425
UniParc:UPI0008452E98	UniProt:A0A1D6K3V8	MapMan:35.1	:	:	:

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1 mitochondrial

Coordinates

chr1:-:63811849..63813987

Molecular Weight (calculated)

8201.0 Da

IEP (calculated)

6.060

GRAVY (calculated)

-0.126

Length

74 amino acids

Sequence
(BLAST)

1: MTWWPLKDHI YLHLNHLPPE VLKERLPGIS ETAAIFAGVD VTKEPIPVLP TVHYNMGGIP CPNELPWGGS GYQG

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.