Factsheet for VIT_04s0023g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g04750.t01
VIT_14s0219g00150.t01
VIT_18s0001g10780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	VIT_07s0005g04750.t01	AT1G08480.1	12970493
AT5G66760.1	VIT_18s0001g10780.t01	AT1G47420.1	12970493
AT5G66760.1	VIT_14s0219g00150.t01	AT3G27380.1	12970493
AT5G66760.1	VIT_14s0219g00150.t01	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00810_001	Banana	cytosol	82.99	92.82
PGSC0003DMT400038576	Potato	mitochondrion	85.97	91.43
Solyc02g085350.2.1	Tomato	mitochondrion	85.67	91.26
KRH69929	Soybean	mitochondrion	86.12	91.01
EER90804	Sorghum	mitochondrion	84.03	90.81
AT5G66760.1	Thale cress	mitochondrion	85.37	90.22
CDY57124	Canola	mitochondrion	84.33	90.11
Zm00001d007966_P001	Maize	mitochondrion	83.13	89.98
CDY53847	Canola	mitochondrion	84.18	89.95
CDY30754	Canola	mitochondrion	84.18	89.95
Bra012100.1-P	Field mustard	mitochondrion	83.73	89.9
KXG34367	Sorghum	mitochondrion	82.99	89.82
CDX81369	Canola	mitochondrion	84.18	89.81
CDY49839	Canola	mitochondrion	84.03	89.65
HORVU0Hr1G013850.1	Barley	cytosol	73.28	89.6
KRH76805	Soybean	mitochondrion	83.88	89.21
TraesCS2A01G255100.1	Wheat	plastid	82.39	89.18
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	82.39	89.18
Os07t0134800-01	Rice	mitochondrion	83.58	88.89
KRH28665	Soybean	mitochondrion	83.58	88.89
TraesCS2B01G267100.1	Wheat	mitochondrion	75.22	88.27
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	81.64	88.08
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	81.34	87.76
HORVU2Hr1G061040.10	Barley	mitochondrion	69.1	87.52
TraesCS5D01G420100.1	Wheat	mitochondrion	77.16	87.48
Bra024466.1-P	Field mustard	mitochondrion	82.39	87.34
CDY29234	Canola	mitochondrion	82.09	86.89
CDY36482	Canola	mitochondrion	81.79	86.57
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	29.1	86.28
AT2G18450.1	Thale cress	mitochondrion	81.04	85.92
Zm00001d018758_P001	Maize	mitochondrion	75.22	80.9
Zm00001d029250_P001	Maize	cytosol	8.51	77.03
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	14.18	74.22
VIT_13s0064g01420.t01	Wine grape	cytosol, mitochondrion, peroxisome	4.03	64.29
Zm00001d038502_P001	Maize	cytosol	16.72	51.38
Zm00001d025385_P001	Maize	cytosol	8.81	45.38
Zm00001d029316_P001	Maize	cytosol	11.94	41.45
VIT_14s0066g01240.t01	Wine grape	cytosol, plastid	28.06	28.27

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	EntrezGene:100254718
wikigene:100254718	MapMan:2.3.6.1.1	Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	EMBL:AM458867
ProteinID:CAN74538	ProteinID:CAN74538.1	ProteinID:CBI17530	ProteinID:CBI17530.3	UniProt:D7SPF1	InterPro:FAD-binding_2
InterPro:FAD/NAD-bd_sf	EMBL:FN594959	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000104
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005749	GO:GO:0006091
GO:GO:0006099	GO:GO:0006121	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009061	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016627
GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188	EntrezGene:LOC100254718
wikigene:LOC100254718	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632
PANTHER:PTHR11632:SF51	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd
InterPro:Succ_Dhase_FrdA_Gneg	TIGR:TC51756	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI0001983147	ArrayExpress:VIT_04s0023g01650
EnsemblPlantsGene:VIT_04s0023g01650	EnsemblPlants:VIT_04s0023g01650.t01	unigene:Vvi.12221	RefSeq:XP_002269407	RefSeq:XP_002269407.1	RefSeq:XP_003631879
RefSeq:XP_003631879.1	SEG:seg	:	:	:	:

Description

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7SPF1]

Coordinates

chr4:+:18184839..18192175

Molecular Weight (calculated)

73663.1 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.379

Length

670 amino acids

Sequence
(BLAST)

001: MWRCVSRGLR FRSSDSKRSL TSEYLKPHIS RFFSTESTGG GSSGTSEAEI KAAIGELSKH GVDTAGITEL YRSSYTSSYT IVDHTYDAVV VGAGGAGLRA
101: AIGLSEHGFN TACITKLFPT RSHTVAAQGG INAALGNMTE DDWRWHMYDT VKGSDWLGDQ DAIQYMCREA PKAVIELENY GLPFSRTEDG RIYQRAFGGQ
201: SLNFGKGGQA YRCACAADRT GHALLHTLYG QAMKHNTQFF VEYFALDLLM DNDGACQGVI ALNMEDGTLH RFQAASTILA TGGYGRTYFS ATSAHTCTGD
301: GNAMVARAGL PLQDLEFVQF HPTGIYGAGC LITEGSRGEG GILRNSEGER FMERYAPTAK DLASRDVVSR SMTMEIREGR GVGPLKDHIY LHLNHLPPEV
401: LKERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT NYHGEVLTIK GNDPDAVVPG LMAAGEAACA SVHGANRLGA NSLLDIVVFG RACANRVAEI
501: HKPGEKQKPL EKDSGEKTIA WLDKLRNSNG SIPTSKIRLN MQRVMQNNAA VFRTQETLEE GCKLIDKAWE SFHDVQLKDR SLIWNSDLSE TIELENLLIN
601: ACITMHSAEA RKESRGAHAR EDFTKRDDEN WIRHTLGYWE NEKVRLDYRP VHMNPLDDEI ESIPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.