Factsheet for Os07t0134800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
mitochondrion: 19010998
cytosol: 19685898
mitochondrion: 19924544
mitochondrion: 23027867
mitochondrion: 23356873

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 19924544 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, M316, Crawley, WA, 6009, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0418000-01
Os08t0112800-01
Os08t0120000-05
Os09t0370200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Os08t0112800-01	AT1G08480.1	12970493
AT5G66760.1	Os04t0418000-01	AT1G47420.1	12970493
AT5G66760.1	Os08t0120000-05	AT3G27380.1	12970493
AT5G66760.1	Os09t0370200-01	AT3G27380.1	12970493
AT5G66760.1	Os08t0120000-05	AT5G40650.1	12970493
AT5G66760.1	Os09t0370200-01	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G255100.1	Wheat	plastid	92.86	94.51
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	92.7	94.35
KXG34367	Sorghum	mitochondrion	92.38	94.02
GSMUA_Achr7P00810_001	Banana	cytosol	89.21	93.82
EER90804	Sorghum	mitochondrion	92.06	93.55
Zm00001d007966_P001	Maize	mitochondrion	91.9	93.54
TraesCS2B01G267100.1	Wheat	mitochondrion	84.76	93.52
HORVU0Hr1G013850.1	Barley	cytosol	80.63	92.7
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	90.32	91.63
HORVU2Hr1G061040.10	Barley	mitochondrion	76.83	91.49
TraesCS5D01G420100.1	Wheat	mitochondrion	85.71	91.37
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	90.0	91.3
Solyc02g085350.2.1	Tomato	mitochondrion	89.21	89.35
PGSC0003DMT400038576	Potato	mitochondrion	89.05	89.05
CDY57124	Canola	mitochondrion	87.94	88.36
CDX81369	Canola	mitochondrion	87.78	88.06
CDY53847	Canola	mitochondrion	87.62	88.04
CDY30754	Canola	mitochondrion	87.62	88.04
Bra012100.1-P	Field mustard	mitochondrion	87.14	87.98
CDY49839	Canola	mitochondrion	87.46	87.74
KRH69929	Soybean	mitochondrion	88.1	87.54
KRH28665	Soybean	mitochondrion	87.3	87.3
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	31.27	87.17
KRH76805	Soybean	mitochondrion	87.14	87.14
AT5G66760.1	Thale cress	mitochondrion	87.46	86.91
Bra024466.1-P	Field mustard	mitochondrion	86.83	86.55
CDY36482	Canola	mitochondrion	86.51	86.1
CDY29234	Canola	mitochondrion	86.51	86.1
Zm00001d018758_P001	Maize	mitochondrion	84.13	85.07
AT2G18450.1	Thale cress	mitochondrion	84.29	84.02
VIT_04s0023g01650.t01	Wine grape	mitochondrion	88.89	83.58
Zm00001d029250_P001	Maize	cytosol	9.05	77.03
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	15.24	75.0
Zm00001d038502_P001	Maize	cytosol	17.94	51.83
Zm00001d025385_P001	Maize	cytosol	9.52	46.15
Zm00001d029316_P001	Maize	cytosol	12.7	41.45
Os02t0134400-01	Rice	plastid	29.68	28.99

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	MapMan:2.3.6.1.1
Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	EntrezGene:4342350	EMBL:AK065901	ProteinID:BAC83515.1
ProteinID:BAF20759.1	ProteinID:BAS99963.1	ProteinID:BAS99964.1	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS
InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0000104	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0005749	GO:GO:0006091	GO:GO:0006099	GO:GO:0006121	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009061	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016627	GO:GO:0022900	GO:GO:0045273	GO:GO:0046872
GO:GO:0050660	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188	EnsemblPlantsGene:Os07g0134800	EnsemblPlants:Os07t0134800-01
PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171	ScanProsite:PS00504	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51
UniProt:Q6ZDY8	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd
InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812	TIGRFAMs:TIGR01816	UniParc:UPI00001BF35A	RefSeq:XP_015646992.1	SEG:seg

Description

SUCCINATE DEHYDROGENASE SUBUNIT 1Similar to Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of complex II). (Os07t0134800-01);Similar to Succinate dehydrogenase. (Os07t0134800-04)

Coordinates

chr7:-:1860739..1866531

Molecular Weight (calculated)

68857.7 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.327

Length

630 amino acids

Sequence
(BLAST)

001: MWRGCVSRGL RSLSKGKGSS SSAPVSAAAR LFSTASSSYT VVDHSYDAVV VGAGGAGLRA AIGLSEHGFN TACITKLFPT RSHTVAAQGG INAALGNMTE
101: DDWRWHMYDT VKGSDWLGDQ DSIQYMCREA PKAVIELENY GLPFSRTEDG KIYQRAFGGQ SLDFGKGGQA YRCACAADRT GHAMLHTLYG QAMKHNTQFF
201: VEYFALDLIM DSEGTCQGVI ALNMEDGTLH RFRATNTILA TGGYGRAYFS ATSAHTCTGD GNAMVARAGL PLQDLEFVQF HPTGIYGAGC LITEGSRGEG
301: GILRNSEGER FMERYAPTAK DLASRDVVSR SMTMEIREGR GVGPLKDHIY LHLNHLPPEV LKERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT
401: NYHGEVVTMK GDNPDSVVPG LMAAGEAACA SVHGANRLGA NSLLDIVVFG RACANRVAET AKPGEKQKPL QKSAGEKTIA WLDKLRNANG SLPTSKIRLN
501: MQRVMQNNAA VFRTQETLEE GCKLITKAWE SYHDVKISDR SLIWNSDLIE TIELENLLIN ACITMHSAEA RKESRGAHAR EDFTKRDDEQ WMKHSLGYWE
601: NEKVRLAYRP VHMNTLDSEV ESFPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.