Factsheet for Zm00001d015183_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005726_P001
Zm00001d013595_P001
Zm00001d020409_P002
Zm00001d032009_P001
Zm00001d032937_P001
Zm00001d050365_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14760.1	Zm00001d005726_P001	AT3G17860.1	21798944
AT5G14760.1	Zm00001d020409_P002	AT3G17860.1	21798944
AT5G14760.1	Zm00001d032009_P001	AT3G17860.1	21798944
AT5G14760.1	Zm00001d050365_P006	AT3G17860.1	21798944
AT5G14760.1	Zm00001d013595_P001	AT3G63210.1	21798944
AT5G14760.1	Zm00001d032937_P001	AT3G63210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04469	Sorghum	plastid	88.77	90.67
Os02t0134400-01	Rice	plastid	82.04	84.96
TraesCS6A01G099200.1	Wheat	mitochondrion, plastid	80.09	83.46
TraesCS6D01G083200.1	Wheat	plastid	79.79	83.15
TraesCS6B01G127300.1	Wheat	plastid	79.79	83.15
HORVU6Hr1G017860.12	Barley	plastid	79.79	82.51
GSMUA_Achr10P...	Banana	plastid	66.02	73.75
Solyc12g014530.1.1	Tomato	plastid	65.72	72.56
Solyc01g056580.2.1	Tomato	cytosol	40.87	70.73
PGSC0003DMT400033442	Potato	mitochondrion	66.47	68.84
VIT_14s0066g01240.t01	Wine grape	cytosol, plastid	68.26	68.57
KRH56611	Soybean	plastid	65.12	67.23
Bra008739.1-P	Field mustard	cytosol, plastid	65.12	67.03
CDX69560	Canola	cytosol, plastid	65.12	67.03
AT5G14760.1	Thale cress	plastid	64.97	66.67
CDY09883	Canola	plastid	64.67	66.56
Zm00001d007966_P001	Maize	mitochondrion	27.54	29.73
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	5.24	27.34
Zm00001d025385_P001	Maize	cytosol	5.24	26.92
Zm00001d018758_P001	Maize	mitochondrion	24.1	25.84
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	8.23	24.34
Zm00001d038502_P001	Maize	cytosol	7.93	24.31
Zm00001d029250_P001	Maize	cytosol	2.54	22.97
Zm00001d029316_P001	Maize	cytosol	4.49	15.54

Protein Annotations

KEGG:00250+1.4.3.16	KEGG:00760+1.4.3.16	Gene3D:1.20.58.100	EntrezGene:100279867	Gene3D:3.50.50.60	Gene3D:3.90.700.10
MapMan:7.9.1.1	UniProt:A0A1D6GZS8	ProteinID:AQK68243.1	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:Fum_R/Succ_DH_flav-like_C_sf
InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008734	GO:GO:0009058
GO:GO:0009435	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0019363
GO:GO:0044318	GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188	InterPro:NadB	PFAM:PF00890
PFAM:PF02910	PRINTS:PR00368	PANTHER:PTHR42716	PANTHER:PTHR42716:SF2	SUPFAM:SSF46977	SUPFAM:SSF51905
SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	TIGRFAMs:TIGR00551	UniParc:UPI0008442D8A	EnsemblPlantsGene:Zm00001d015183	EnsemblPlants:Zm00001d015183_P002
EnsemblPlants:Zm00001d015183_T002	:	:	:	:	:

Description

L-aspartate oxidase chloroplastic

Coordinates

chr5:+:78672023..78677071

Molecular Weight (calculated)

73533.1 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.151

Length

668 amino acids

Sequence
(BLAST)

001: MANLTNGFAS LHCAGAMHVD KGHMQASGLP FLSFRRCAQL DISRLGSVPR FMGATSATVS QHHVRQRISA IRASTLSCLQ DDATKFFDFV VIGSGVAGLR
101: YALEVSKHGS VAIITKAEPH ESNTNYAQGG VSAVLCPSDS VESHMKDTIV AGAYLCDEEI VRVSVVCTEG PERVKELIAM GASFDHGEDG RLHLAREGGH
201: SHNRIVHSAD MTGREIERAL LQAVHNDDNI SLFGHHFAID LLTFLLQKNG EIYCYGVDSI DIETQKVVRF ISKVTLLASG GAGHIYPTTT NPPVATGDGI
301: AMCHRAQAVI SNMEFVQFHP TALSDEGLPI KPKTRRENAF LITEAVRGDG GILYNQSMER FMPMYDDRSE LAPRDVVARS IDDQLKKRGE KYVLLDISHR
401: PRDKVLAHFP NIAAECLRYG LDITRQPIPV VPAAHYMCGG VRAGLQGETN VKGLYVAGEV ACTGLHGANR LASNSLLEAL VFARRAVQPS IDLMVDADGD
501: ARPSLVARWA RPTLPRSVLG DSVLSDIVGR TRQARMELQS VMWEYVGIVR STGRLKQAEW RIGDLESEWE EFLFRRGWKP TTVGVEVCEM RNLFCCAKLV
601: VRSALARRES RGLHFTEDFP YLEESRRKPT VIFPAAVQEL TWSSKPLQRQ LQADDNACSS SGWALGIR

Best Arabidopsis Sequence Match ( AT2G18450.1 )
(BLAST)

001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY

Arabidopsis Description

SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.