Factsheet for Solyc01g056580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118540.2.1
Solyc06g068930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14760.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G14760.1	Solyc06g068930.1.1	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014530.1.1	Tomato	plastid	89.64	57.19
PGSC0003DMT400033442	Potato	mitochondrion	88.34	52.87
VIT_14s0066g01240.t01	Wine grape	cytosol, plastid	78.24	45.41
KRH56611	Soybean	plastid	73.58	43.89
Bra008739.1-P	Field mustard	cytosol, plastid	73.58	43.76
CDX69560	Canola	cytosol, plastid	73.58	43.76
CDY09883	Canola	plastid	73.06	43.45
AT5G14760.1	Thale cress	plastid	73.06	43.32
Os02t0134400-01	Rice	plastid	71.5	42.79
TraesCS6A01G099200.1	Wheat	mitochondrion, plastid	70.47	42.43
TraesCS6B01G127300.1	Wheat	plastid	70.47	42.43
TraesCS6D01G083200.1	Wheat	plastid	70.21	42.28
HORVU6Hr1G017860.12	Barley	plastid	70.47	42.11
EES04469	Sorghum	plastid	70.98	41.9
GSMUA_Achr10P...	Banana	plastid	64.51	41.64
Zm00001d015183_P002	Maize	plastid	70.73	40.87
Solyc02g085350.2.1	Tomato	mitochondrion	29.79	18.28

Protein Annotations

KEGG:00250+1.4.3.16	KEGG:00760+1.4.3.16	Gene3D:1.20.58.100	Gene3D:3.50.50.60	Gene3D:3.90.700.10	MapMan:7.9.1.1
InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008734	GO:GO:0009058	GO:GO:0009435	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	InterPro:IPR027477	InterPro:IPR036188	UniProt:K4AVM4	InterPro:NadB	PFAM:PF00890
PFAM:PF02910	PANTHER:PTHR42716	PANTHER:PTHR42716:SF2	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425
EnsemblPlantsGene:Solyc01g056580.2	EnsemblPlants:Solyc01g056580.2.1	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	UniParc:UPI000276190B	:	:

Description

No Description!

Coordinates

chr1:+:54884368..54888162

Molecular Weight (calculated)

43124.8 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.236

Length

386 amino acids

Sequence
(BLAST)

001: MATLGDNKDN DVVSNLKHER MLSMKGGKGE ASYVNNSQAQ VRRFISKVTL LASGGAGHIY PTTTNPPVWF VLFHPTALAD EGLPIRPSNA RENAFLITEA
101: VRGDGGILYN LDMERFMPSY DERAELAPRD VVARSIDDQL KKRGEEYVLD ISHKPKEKIL SHFPNIAAEC LRYGLDITQQ PIPVVPAAHY MCGGVRAGLE
201: GETNVRGLYV AGEVACTGLH GANRLASNSL AEELVFARRA VQPSIDHMNL SKIGHSASNW WQRPVAPLLL GDTVVNKVIH QTREVRKELQ SIMWEYVGIV
301: RSTSRLTLAE TRIIELELKW EQYLFQHGWE PTMVGLEACE MRNLFCCAKL VVSSALSRHE SRGLHYTIDF PHVDESKRLP TVIFPS

Best Arabidopsis Sequence Match ( AT5G14760.1 )
(BLAST)

001: MAAHVSTGNI HNFYLAGQVY RGQAFSWSSA STFMANPFKE PSWSSGVFKA LKAERCGCYS RGISPISETS KPIRAVSVSS STKYYDFTVI GSGVAGLRYA
101: LEVAKQGTVA VITKDEPHES NTNYAQGGVS AVLCPLDSVE SHMRDTMVAG AHLCDEETVR VVCTEGPERI RELIAMGASF DHGEDGNLHL AREGGHSHCR
201: IVHAADMTGR EIERALLEAV LNDPNISVFK HHFAIDLLTS QDGLNTVCHG VDTLNIKTNE VVRFISKVTL LASGGAGHIY PSTTNPLVAT GDGMAMAHRA
301: QAVISNMEFV QFHPTALADE GLPIKLQTAR ENAFLITEAV RGDGGILYNL GMERFMPVYD ERAELAPRDV VARSIDDQLK KRNEKYVLLD ISHKPREKIL
401: AHFPNIASEC LKHGLDITRQ PIPVVPAAHY MCGGVRAGLQ GETNVLGLFV AGEVACTGLH GANRLASNSL LEALVFARRA VQPSTELMKR TRLDVCASEK
501: WTRPVVATAR LLGDEVIAKI IALTKEVRRE LQEVMWKYVG IVRSTIRLTT AERKIAELEA KWETFLFEHG WEQTVVALEA CEMRNLFCCA KLVVSSALAR
601: HESRGLHYMT DFPFVEESKR IPTIILPSSP TTASWSSRRL QNISSSSLID C

Arabidopsis Description

AOL-aspartate oxidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.