CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P31630_001	Banana	cytosol, mitochondrion, peroxisome	50.31	62.31
VIT_13s0064g01420.t01	Wine grape	cytosol, mitochondrion, peroxisome	13.66	52.38
KRH69929	Soybean	mitochondrion	63.98	16.25
KRH76805	Soybean	mitochondrion	57.76	14.76
KRH28665	Soybean	mitochondrion	57.14	14.6
KRH56611	Soybean	plastid	19.25	4.79
GSMUA_Achr6P31640_001	Banana	mitochondrion	10.56	3.57
CDY53401	Canola	extracellular	0.62	0.7
KXG35242	Sorghum	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.58.100	EntrezGene:100800175	MapMan:35.1	Gene3D:4.10.80.40	EMBL:ACUP02000444	InterPro:Fum_R/Succ_DH_flav-like_C_sf
InterPro:Fum_Rdtase/Succ_DH_flav-like_C	EnsemblPlantsGene:GLYMA_01G100600	GO:GO:0000104	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005749	GO:GO:0006091
GO:GO:0006099	GO:GO:0006121	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009061	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	UniProt:K7K2Y6
EnsemblPlants:KRH75678	ProteinID:KRH75678	ProteinID:KRH75678.1	PFAM:PF02910	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51
SUPFAM:SSF46977	SignalP:SignalP-noTM	UniParc:UPI00023BE9AE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:33380858..33383286

Molecular Weight (calculated)

18172.3 Da

IEP (calculated)

6.413

GRAVY (calculated)

-0.571

Length

161 amino acids

Sequence
(BLAST)

001: MDRIHYLLMS VLFFSNCHTD PAISAASSSH HNHRNMPVRV LENTAAPSSQ VSGANSGRSS CQSCSLLGVG QPEISNSDLI ETIELENLLI NACITMHSAE
101: ARKESRGAHA REDFTKRDDE KWMKHTLGYW DNEKVRLDYR PVHMNTLDDE VESFPPKARV Y

Best Arabidopsis Sequence Match ( AT2G18450.1 )
(BLAST)

001: MWRCLRVASS SRRSESNGAF ITSQLSRFFS APPSAGDKSS YTIVDHTYDA VVVGAGGAGL RAAIGLSEHG FNTACITKLF PTRSHTVAAQ GGINAALGNM
101: SVDDWRWHMY DTVKGSDWLG DQDAIQYMCR EAPKAVIELE NYGLPFSRTE DGKIYQRAFG GQSLEFGIGG QAYRCACAAD RTGHALLHTL YGQAMKHNTQ
201: FFVEYFALDL IMNSDGTCQG VIALNMEDGT LHRFHAGSTI LATGGYGRAY FSATSAHTCT GDGNAMVARA GLPLQDLEFV QFHPTGIYGA GCLITEGARG
301: EGGILRNSEG EKFMDRYAPT ARDLASRDVV SRSMTMEIRQ GRGAGPMKDY LYLYLNHLPP EVLKERLPGI SETAAIFAGV DVTREPIPVL PTVHYNMGGI
401: PTNYHGEVIT LRGDDPDAVV PGLMAAGEAA CASVHGANRL GANSLLDIVV FGRACANRVA EIQKPGEKLK PLEKDAGEKS IEWLDRIRNS NGSLPTSKIR
501: LNMQRVMQNN AAVFRTQETL EEGCDLIDKT WDSFGDVKVT DRSMIWNSDL IETMELENLL VNACITMHSA EARKESRGAH AREDFTKRDD ANWMKHTLGY
601: WEEGNVKLEY RPVHMKTLDD EVDTFPPKPR VY

Arabidopsis Description

SDH1-2Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178VRF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.