Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 6
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32210.1 | KRG89352 | AT1G08480.1 | 12970493 |
| AT4G32210.1 | KRH05703 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | KRH15341 | AT1G47420.1 | 12970493 |
| AT4G32210.1 | KRG94380 | AT3G27380.1 | 12970493 |
| AT4G32210.1 | KRH07075 | AT3G27380.1 | 12970493 |
| AT4G32210.1 | KRG94380 | AT5G40650.1 | 12970493 |
| AT4G32210.1 | KRH07075 | AT5G40650.1 | 12970493 |
| AT4G32210.1 | KRH28665 | AT5G66760.1 | 12970493 |
| AT4G32210.1 | KRH69929 | AT5G66760.1 | 12970493 |
| AT4G32210.1 | KRH76805 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | KRG89352 | AT1G08480.1 | 12970493 |
| AT5G09600.1 | KRH05703 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | KRH15341 | AT1G47420.1 | 12970493 |
| AT5G09600.1 | KRG94380 | AT3G27380.1 | 12970493 |
| AT5G09600.1 | KRH07075 | AT3G27380.1 | 12970493 |
| AT5G09600.1 | KRG94380 | AT5G40650.1 | 12970493 |
| AT5G09600.1 | KRH07075 | AT5G40650.1 | 12970493 |
| AT5G09600.1 | KRH28665 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | KRH69929 | AT5G66760.1 | 12970493 |
| AT5G09600.1 | KRH76805 | AT5G66760.1 | 12970493 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25379 | Soybean | mitochondrion | 93.03 | 91.16 |
| PGSC0003DMT400021489 | Potato | cytosol, endoplasmic reticulum, extracellular, mitochondrion | 21.72 | 49.07 |
| GSMUA_AchrUn_... | Banana | extracellular | 14.34 | 38.89 |
| AT4G32210.1 | Thale cress | mitochondrion | 24.18 | 27.7 |
| AT5G09600.1 | Thale cress | mitochondrion | 24.18 | 27.7 |
| Bra009392.1-P | Field mustard | mitochondrion | 23.77 | 27.49 |
| CDX69897 | Canola | mitochondrion | 23.77 | 27.49 |
| CDY21589 | Canola | mitochondrion | 23.77 | 27.23 |
Protein Annotations
| KEGG:00290+4.2.1.33 | Gene3D:1.20.1300.10 | EntrezGene:100527396 | MapMan:2.3.6.1.3 | Gene3D:3.20.19.10 | EMBL:ACUP02004100 |
| InterPro:Aconitase/3IPM_dehydase_swvl | EnsemblPlantsGene:GLYMA_06G305600 | GO:GO:0000104 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005749 |
| GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006121 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016627 | GO:GO:0045281 | GO:GO:0046872 |
| GO:GO:0055114 | UniProt:I1KFD0 | InterPro:IPR015928 | InterPro:IPR034804 | EnsemblPlants:KRH56129 | ProteinID:KRH56129 |
| ProteinID:KRH56129.1 | PFAM:PF01127 | PANTHER:PTHR10978 | PANTHER:PTHR10978:SF5 | InterPro:SQR/QFR_C/D | SUPFAM:SSF81343 |
| InterPro:SuccDH_FuR_B_TM-su | TMHMM:TMhelix | UniParc:UPI00023C71E0 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:-:49446219..49450312
Molecular Weight (calculated)
26738.5 Da
IEP (calculated)
10.638
GRAVY (calculated)
0.057
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWLLRSTKS KFLSSSSSSS LSRTFPSLPR PQIGAISPLP DLFHRNTATM PFAKENASGG NLTGLPKVPA NKLGSDSDAT NSSRYKASGL NTNVLAGARY
101: VSRVWAAQGQ MPLGVNTVMA RSFERSMEAG TLGMIGHKRF MSDIPSKTSE TNPSGFRPLS PHLPLYQPQL SSTLSIFNRI AGAFLAGVIL VFYMIYMKLG
201: LVSLTYDSFY QFIFYSSKLN LLVMEISALA VSYHLYSAIR HLFL
101: VSRVWAAQGQ MPLGVNTVMA RSFERSMEAG TLGMIGHKRF MSDIPSKTSE TNPSGFRPLS PHLPLYQPQL SSTLSIFNRI AGAFLAGVIL VFYMIYMKLG
201: LVSLTYDSFY QFIFYSSKLN LLVMEISALA VSYHLYSAIR HLFL
001: MAATALFRSI RRRDVVSAPL SVYKSLAGNA QPSWGSSYIG QNYASFSRAF GSKPVVNDIL GTGLGTNNAI REEREKSKST EAAIVGAQLT RSFRALDVGT
101: SKRLFSTISG DIKTTQEEPK IKSFRPLSPH LSVYQPQMNS MLSIFNRISG VYLTGVTFAG YLLYLKMGMI CLTYPSFYQV LYHTQQQLPV ITSVTALAAI
201: YHTIKSTHSL LTH
101: SKRLFSTISG DIKTTQEEPK IKSFRPLSPH LSVYQPQMNS MLSIFNRISG VYLTGVTFAG YLLYLKMGMI CLTYPSFYQV LYHTQQQLPV ITSVTALAAI
201: YHTIKSTHSL LTH
Arabidopsis Description
SDH3-1Succinate dehydrogenase subunit 3-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0DKI1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.