CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05879	Soybean	endoplasmic reticulum	84.03	81.3
KRH51778	Soybean	endoplasmic reticulum	70.59	71.79
KRH76717	Soybean	endoplasmic reticulum, nucleus	66.39	65.83
KRH28739	Soybean	cytosol	66.39	65.83
KRH61100	Soybean	cytosol	62.18	63.25
PGSC0003DMT400009623	Potato	cytosol	63.87	61.79
Solyc04g080850.2.1	Tomato	extracellular	63.03	60.98
TraesCS1D01G327500.1	Wheat	cytosol, plastid	57.14	57.14
TraesCS1B01G339000.1	Wheat	cytosol	56.3	56.78
HORVU1Hr1G075560.1	Barley	cytosol	52.1	50.82
OQU78269	Sorghum	cytosol	51.26	48.41
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	51.26	48.03
TraesCS1A01G325600.1	Wheat	cytosol	52.1	47.69
KRH01123	Soybean	cytosol	47.06	45.53
Zm00001d038652_P003	Maize	cytosol	48.74	45.31
KRH45834	Soybean	cytosol, plastid	45.38	44.63
KRG99185	Soybean	cytosol, plastid	44.54	43.8
KRH40137	Soybean	endoplasmic reticulum	47.06	42.75
KRH74753	Soybean	cytosol	44.54	42.74
KRH40138	Soybean	cytosol, plastid	43.7	41.6
TraesCS7D01G001000.1	Wheat	cytosol	39.5	41.59
KRH01124	Soybean	endoplasmic reticulum	46.22	41.35
KRH74754	Soybean	cytosol	43.7	41.27
KRH69384	Soybean	cytosol	43.7	40.62
KRH10686	Soybean	cytosol	42.02	40.32
TraesCS7A01G562100.1	Wheat	cytosol	35.29	39.62
KRH69383	Soybean	cytosol	42.02	39.37
KRH21649	Soybean	cytosol, plastid	41.18	39.2
KRH09556	Soybean	cytosol	41.18	35.77
KRH40136	Soybean	endoplasmic reticulum	46.22	35.03
KRH01119	Soybean	cytosol	41.18	35.0
KRH74748	Soybean	plastid	40.34	34.78
KRH69387	Soybean	plastid	39.5	34.06
KRH00477	Soybean	cytosol	39.5	33.81
KRH22228	Soybean	cytosol	34.45	33.61
KRH25890	Soybean	nucleus	35.29	33.33
KRH64869	Soybean	cytosol	41.18	32.03
KRH55615	Soybean	cytosol	32.77	30.95
KRH27111	Soybean	nucleus	32.77	30.95
KRH33304	Soybean	cytosol	31.09	29.37
KRH40706	Soybean	mitochondrion	37.82	26.63
KRH00940	Soybean	nucleus, plastid	37.82	25.14
KRH40285	Soybean	plastid	37.82	24.86

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	EMBL:ACUP02008564	EnsemblPlantsGene:GLYMA_14G070500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1M877	InterPro:IPR013766	EnsemblPlants:KRH15131	ProteinID:KRH15131	ProteinID:KRH15131.1
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF293	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0001CA91B6	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:5918611..5920749

Molecular Weight (calculated)

13019.7 Da

IEP (calculated)

5.153

GRAVY (calculated)

0.081

Length

119 amino acids

Sequence
(BLAST)

001: MAEEGQVVGV HTVDAWNQQL QNGKDSQKLI VVDFTASWCG PCRFIAPVLA EIARHTPQVI FLKVDVDEVR PVAEEYSIEA MPTFLFLKDG KIVDKVVGAK
101: KEELQLTIAK HVSAAAASS

Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)

001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA

Arabidopsis Description

TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.