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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH15131 Soybean cytosol, nucleus 81.3 84.03
KRH51778 Soybean endoplasmic reticulum 66.67 70.09
KRH76717 Soybean endoplasmic reticulum, nucleus 64.23 65.83
Solyc04g080850.2.1 Tomato extracellular 65.04 65.04
KRH28739 Soybean cytosol 62.6 64.17
PGSC0003DMT400009623 Potato cytosol 62.6 62.6
KRH61100 Soybean cytosol 59.35 62.39
TraesCS1D01G327500.1 Wheat cytosol, plastid 54.47 56.3
TraesCS1B01G339000.1 Wheat cytosol 53.66 55.93
HORVU1Hr1G075560.1 Barley cytosol 53.66 54.1
TraesCS1B01G338800.1 Wheat cytosol, golgi, plastid, unclear 52.03 50.39
TraesCS1A01G325600.1 Wheat cytosol 52.85 50.0
OQU78269 Sorghum cytosol 50.41 49.21
Zm00001d038652_P003 Maize cytosol 49.59 47.66
KRH01123 Soybean cytosol 43.9 43.9
KRH40137 Soybean endoplasmic reticulum 46.34 43.51
TraesCS7A01G562100.1 Wheat cytosol 36.59 42.45
KRH45834 Soybean cytosol, plastid 41.46 42.15
KRG99185 Soybean cytosol, plastid 41.46 42.15
KRH74753 Soybean cytosol 41.46 41.13
TraesCS7D01G001000.1 Wheat cytosol 37.4 40.71
KRH40138 Soybean cytosol, plastid 40.65 40.0
KRH01124 Soybean endoplasmic reticulum 43.09 39.85
KRH74754 Soybean cytosol 40.65 39.68
KRH10686 Soybean cytosol 39.84 39.52
KRH69384 Soybean cytosol 40.65 39.06
KRH69383 Soybean cytosol 39.02 37.8
KRH21649 Soybean cytosol, plastid 38.21 37.6
KRH22228 Soybean cytosol 34.96 35.25
KRH09556 Soybean cytosol 38.21 34.31
KRH01119 Soybean cytosol 38.21 33.57
KRH27111 Soybean nucleus 34.15 33.33
KRH25890 Soybean nucleus 34.15 33.33
KRH40136 Soybean endoplasmic reticulum 42.28 33.12
KRH00477 Soybean cytosol 36.59 32.37
KRH74748 Soybean plastid 34.96 31.16
KRH55615 Soybean cytosol 31.71 30.95
KRH69387 Soybean plastid 34.15 30.43
KRH64869 Soybean cytosol 37.4 30.07
KRH33304 Soybean cytosol 30.08 29.37
KRH00940 Soybean nucleus, plastid 38.21 26.26
KRH40285 Soybean plastid 38.21 25.97
KRH40706 Soybean mitochondrion 34.96 25.44
Protein Annotations
MapMan:10.6.1EntrezGene:100499871MapMan:18.7.2Gene3D:3.40.30.10EMBL:ACUP02010782EnsemblPlantsGene:GLYMA_17G254200
GO:GO:0003674GO:GO:0003824GO:GO:0004791GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006662GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0015035GO:GO:0016671GO:GO:0019725GO:GO:0034599GO:GO:0045454GO:GO:0047134
GO:GO:0055114GO:GO:0098869UniProt:I1MXZ6InterPro:IPR013766EnsemblPlants:KRH05879ProteinID:KRH05879
ProteinID:KRH05879.1PFAM:PF00085PIRSF:PIRSF000077PRINTS:PR00421ScanProsite:PS00194PFscan:PS51352
PANTHER:PTHR10438PANTHER:PTHR10438:SF293SUPFAM:SSF52833InterPro:ThioredoxinInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CS
InterPro:Thioredoxin_domainUniParc:UPI00005AF266SEG:seg:::
Description
hypothetical protein
Coordinates
chr17:-:40815774..40818539
Molecular Weight (calculated)
13377.1 Da
IEP (calculated)
4.504
GRAVY (calculated)
0.109
Length
123 amino acids
Sequence
(BLAST)
001: MAEVEEGQVI GVHTVDEWKL QLQNAKDSKK LIVVDFTASW CGPCRFMAPV LAEIAKKTPE LIFLKVDVDE VRPVAEEYSI EAMPTFLFLK DGEIVDKVVG
101: ASKDDLQATI AKHASAVAAA SSS
Best Arabidopsis Sequence Match ( AT1G19730.1 )
(BLAST)
001: MAAEEGQVIG CHTNDVWTVQ LDKAKESNKL IVIDFTASWC PPCRMIAPIF NDLAKKFMSS AIFFKVDVDE LQSVAKEFGV EAMPTFVFIK AGEVVDKLVG
101: ANKEDLQAKI VKHTGVTTA
Arabidopsis Description
TRX4Thioredoxin H4 [Source:UniProtKB/Swiss-Prot;Acc:Q39239]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.