Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08710.1 | KRH01466 | AT3G02470.1 | 21798944 |
| AT3G08710.1 | KRH45175 | AT3G02470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40706 | Soybean | mitochondrion | 92.09 | 75.74 |
| CDY58647 | Canola | cytosol | 74.82 | 74.29 |
| KRH09556 | Soybean | cytosol | 72.66 | 73.72 |
| CDX73940 | Canola | cytosol | 74.1 | 73.57 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 72.66 | 72.66 |
| AT3G08710.1 | Thale cress | cytosol | 72.66 | 72.14 |
| CDY35999 | Canola | cytosol | 72.66 | 72.14 |
| Bra040055.1-P | Field mustard | cytosol | 69.78 | 70.8 |
| PGSC0003DMT400076843 | Potato | cytosol | 41.73 | 70.73 |
| KRH64869 | Soybean | cytosol | 76.26 | 69.28 |
| CDY22165 | Canola | cytosol | 72.66 | 69.18 |
| Os01t0168200-01 | Rice | plasma membrane | 61.15 | 64.89 |
| Solyc09g015820.2.1 | Tomato | plastid | 70.5 | 63.64 |
| TraesCS1D01G114000.1 | Wheat | cytosol | 59.71 | 63.36 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 59.71 | 63.36 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 59.71 | 63.36 |
| Bra001346.1-P | Field mustard | cytosol | 74.1 | 62.8 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 63.31 | 62.41 |
| Zm00001d037499_P001 | Maize | cytosol | 58.27 | 60.9 |
| Os05t0169000-01 | Rice | cytosol | 57.55 | 60.61 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 60.43 | 60.43 |
| EES19112 | Sorghum | cytosol | 56.83 | 58.96 |
| Zm00001d039710_P004 | Maize | cytosol | 56.83 | 54.86 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 57.55 | 54.79 |
| KXG31771 | Sorghum | cytosol | 58.99 | 54.67 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 56.83 | 47.88 |
| CDY27984 | Canola | nucleus | 72.66 | 47.87 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 39.57 | 45.83 |
| KRH28739 | Soybean | cytosol | 38.13 | 44.17 |
| KRH51778 | Soybean | endoplasmic reticulum | 33.81 | 40.17 |
| KRH15131 | Soybean | cytosol, nucleus | 33.81 | 39.5 |
| KRH61100 | Soybean | cytosol | 33.09 | 39.32 |
| KRH01123 | Soybean | cytosol | 32.37 | 36.59 |
| KRH05879 | Soybean | endoplasmic reticulum | 32.37 | 36.59 |
| KRH10686 | Soybean | cytosol | 31.65 | 35.48 |
| KRH74753 | Soybean | cytosol | 31.65 | 35.48 |
| KRH40137 | Soybean | endoplasmic reticulum | 33.09 | 35.11 |
| KRH21649 | Soybean | cytosol, plastid | 30.94 | 34.4 |
| KRH69384 | Soybean | cytosol | 31.65 | 34.38 |
| KRH74754 | Soybean | cytosol | 30.94 | 34.13 |
| KRH01124 | Soybean | endoplasmic reticulum | 32.37 | 33.83 |
| KRH25890 | Soybean | nucleus | 30.22 | 33.33 |
| KRH69383 | Soybean | cytosol | 29.5 | 32.28 |
| KRH40138 | Soybean | cytosol, plastid | 28.78 | 32.0 |
| KRH22228 | Soybean | cytosol | 28.06 | 31.97 |
| KRH27111 | Soybean | nucleus | 28.78 | 31.75 |
| KRH01119 | Soybean | cytosol | 31.65 | 31.43 |
| KRH45834 | Soybean | cytosol, plastid | 27.34 | 31.41 |
| KRG99185 | Soybean | cytosol, plastid | 27.34 | 31.41 |
| KRH55615 | Soybean | cytosol | 28.06 | 30.95 |
| KRH33304 | Soybean | cytosol | 28.06 | 30.95 |
| KRH40136 | Soybean | endoplasmic reticulum | 34.53 | 30.57 |
| CDY00656 | Canola | cytosol | 75.54 | 28.15 |
| KRH74748 | Soybean | plastid | 25.9 | 26.09 |
| KRH69387 | Soybean | plastid | 25.18 | 25.36 |
| KRH00940 | Soybean | nucleus, plastid | 29.5 | 22.91 |
| KRH40285 | Soybean | plastid | 28.78 | 22.1 |
Protein Annotations
| MapMan:10.6.1 | EntrezGene:100813401 | Gene3D:3.40.30.10 | EMBL:ACUP02011451 | EnsemblPlantsGene:GLYMA_18G215900 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 | GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 |
| GO:GO:0098869 | UniProt:I1N3A8 | InterPro:IPR013766 | EnsemblPlants:KRH00477 | ProteinID:KRH00477 | ProteinID:KRH00477.1 |
| ProteinID:KRH00478.1 | ProteinID:KRH00479.1 | ProteinID:KRH00480.1 | ProteinID:KRH00481.1 | PFAM:PF00085 | PIRSF:PIRSF000077 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0001BA88D6 | : |
Description
hypothetical protein
Coordinates
chr18:-:50295562..50300258
Molecular Weight (calculated)
15717.6 Da
IEP (calculated)
4.770
GRAVY (calculated)
-0.377
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSKNKA RDNDSDHNVD FAAGNVKLIT TKEAWDQYLE EARRDGKIVI ANFSAAWCGP CKMIAPYYCE LSEKYTSMMF LVVDVDELTD FSTSWDIKAT
101: PTFFFLKDGQ QLDKLVGANK PELQKKIVAI NDSLPEYKQ
101: PTFFFLKDGQ QLDKLVGANK PELQKKIVAI NDSLPEYKQ
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.