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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74257
CDX91992
CDX99815
CDY06772
CDY17081
CDY33352
CDY43235
CDY57536
CDY63462
CDY71278
CDY71710

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08710.1 CDX74257 AT3G02470.1 21798944
AT3G08710.1 CDX91992 AT3G02470.1 21798944
AT3G08710.1 CDX99815 AT3G02470.1 21798944
AT3G08710.1 CDY06772 AT3G02470.1 21798944
AT3G08710.1 CDY17081 AT3G02470.1 21798944
AT3G08710.1 CDY33352 AT3G02470.1 21798944
AT3G08710.1 CDY43235 AT3G02470.1 21798944
AT3G08710.1 CDY57536 AT3G02470.1 21798944
AT3G08710.1 CDY63462 AT3G02470.1 21798944
AT3G08710.1 CDY71278 AT3G02470.1 21798944
AT3G08710.1 CDY71710 AT3G02470.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73940 Canola cytosol 36.46 97.14
CDY35999 Canola cytosol 34.32 91.43
AT3G08710.1 Thale cress cytosol 33.78 90.0
CDY58647 Canola cytosol 33.24 88.57
CDY22165 Canola cytosol 33.78 86.3
KRH00477 Soybean cytosol 28.15 75.54
VIT_08s0040g00020.t01 Wine grape cytosol 28.15 75.54
CDY27984 Canola nucleus 40.75 72.04
Os01t0168200-01 Rice plasma membrane 24.13 68.7
KRH09556 Soybean cytosol 25.2 68.61
PGSC0003DMT400076843 Potato cytosol 14.75 67.07
TraesCS1B01G132600.1 Wheat cytosol 23.06 65.65
TraesCS1A01G112400.1 Wheat cytosol 23.06 65.65
TraesCS1D01G114000.1 Wheat cytosol 23.06 65.65
Zm00001d037499_P001 Maize cytosol 23.06 64.66
KRH40706 Soybean mitochondrion 29.22 64.5
Solyc09g015820.2.1 Tomato plastid 26.54 64.29
Os05t0169000-01 Rice cytosol 22.25 62.88
KRH64869 Soybean cytosol 25.47 62.09
EES19112 Sorghum cytosol 21.72 60.45
GSMUA_Achr5P27870_001 Banana cytosol 22.79 60.28
GSMUA_Achr8P01700_001 Banana cytosol 21.72 58.27
KXG31771 Sorghum cytosol 23.32 58.0
Zm00001d039710_P004 Maize cytosol 21.98 56.94
HORVU1Hr1G024700.4 Barley cytosol 22.25 56.85
GSMUA_AchrUn_... Banana cytosol, plasma membrane, plastid 21.45 48.48
CDY70695 Canola cytosol 15.28 41.3
CDX90669 Canola cytosol 12.33 40.35
CDY28996 Canola cytosol 12.33 40.35
CDX77974 Canola cytosol 12.33 40.35
CDX72138 Canola mitochondrion 16.09 40.27
CDY27215 Canola mitochondrion 16.09 40.27
CDY67121 Canola mitochondrion 16.35 40.13
CDY32015 Canola mitochondrion 16.09 39.74
CDX67647 Canola mitochondrion 16.09 39.74
CDY34470 Canola cytosol 5.63 36.21
CDY43592 Canola cytosol 11.26 34.15
CDY32970 Canola cytosol 11.26 34.15
CDY53958 Canola cytosol 10.19 32.48
CDY29406 Canola cytosol 10.19 31.93
CDY39355 Canola cytosol 10.19 31.93
CDY36029 Canola cytosol 9.92 31.36
CDX67442 Canola cytosol 11.26 31.34
CDY34646 Canola cytosol 10.46 30.95
CDY65333 Canola cytosol 10.99 30.83
CDY27290 Canola cytosol 10.46 30.47
CDY45144 Canola cytosol 9.92 28.91
CDY30901 Canola cytosol 9.92 28.91
CDX73752 Canola cytosol, mitochondrion 14.48 24.55
CDY11645 Canola cytosol, plastid 9.92 24.5
CDY38768 Canola cytosol, plastid 9.92 24.5
CDY03743 Canola extracellular 5.63 24.42
CDY57101 Canola cytosol 10.46 23.64
CDY69984 Canola plastid 11.53 23.12
CDY38116 Canola plastid 11.53 22.99
CDY23544 Canola cytosol 9.12 22.97
CDY48388 Canola cytosol 8.85 22.45
CDY04457 Canola cytosol 5.9 22.45
CDY23543 Canola cytosol 8.31 22.14
CDY48387 Canola cytosol 8.31 21.99
CDY53739 Canola plastid 10.46 21.55
CDY37032 Canola cytosol 10.72 21.39
CDY51539 Canola plastid 9.65 20.0
CDY28704 Canola plastid 9.12 18.89
CDY11641 Canola plastid 5.09 9.18
Protein Annotations
MapMan:10.6.1Gene3D:3.40.30.10GO:A0A078EHS3EnsemblPlants:CDY00656ProteinID:CDY00656ProteinID:CDY00656.1
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0006662GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0045454EnsemblPlantsGene:GSBRNA2T00110484001
InterPro:IPR013766PFAM:PF00085ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR10438PANTHER:PTHR10438:SF267
SUPFAM:SSF52833InterPro:ThioredoxinInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CSInterPro:Thioredoxin_domainUniParc:UPI0004EEAFA2
SEG:seg:::::
Description
BnaC03g36400D
Coordinates
chrLK031921:-:59208..63495
Molecular Weight (calculated)
41878.0 Da
IEP (calculated)
7.279
GRAVY (calculated)
-0.566
Length
373 amino acids
Sequence
(BLAST)
001: MKKTKRLQES ISSDRIRLQP PSEKLKETKC LELMDNVEGR NMMRDSIPEL LALHVLKHPI GSEPKPKTHD RNMMRDSIPE LLALPKLKHP IGSEPKPKEP
101: LNESPASPLS QQIETQVYSP NLAQHIEKEQ LNEAPDAHTQ VFSPNVTPQE EEELHLQSTS NDSSNLVASP LRRRSSFDFS FSLSLRFLCQ KSSTFSLSDR
201: IQNSKRSPLL PFQIPVGLAI KQKRNRLCVS DNSMGSCVSK CKEDDDSIHN VDFSGGNVHL ITTKESWDEK LAEAGRDGKI VIANFSATWC GPCKVVAPFY
301: IELSEKHPSI MFLVVDVDEL SDFSSSWDIK ATPTFFFLKN GQQIGKLVGA NKPELQKKVT SILDSVPENP QRP
Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.