CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67442	Canola	cytosol	53.33	65.67
CDY65333	Canola	cytosol	52.73	65.41
AT5G39950.1	Thale cress	cytosol	50.3	62.41
CDY37032	Canola	cytosol	70.3	62.03
KRH01124	Soybean	endoplasmic reticulum	48.48	60.15
VIT_14s0066g02560.t01	Wine grape	cytosol	47.88	58.09
KRH40136	Soybean	endoplasmic reticulum	51.52	54.14
PGSC0003DMT400003564	Potato	plastid	46.06	53.52
KRH40137	Soybean	endoplasmic reticulum	41.82	52.67
KRH01123	Soybean	cytosol	37.58	50.41
KRH40138	Soybean	cytosol, plastid	38.18	50.4
Zm00001d034491_P001	Maize	plastid	39.39	48.87
TraesCS5A01G448200.1	Wheat	cytosol	38.18	48.09
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	38.18	48.09
HORVU5Hr1G107210.1	Barley	cytosol	38.18	48.09
TraesCS5D01G454800.1	Wheat	cytosol	38.18	48.09
EER90722	Sorghum	cytosol	38.18	47.37
Os03t0800700-01	Rice	plastid	38.18	47.01
GSMUA_Achr2P17710_001	Banana	cytosol	35.15	45.67
Os07t0190800-01	Rice	cytosol	38.18	45.65
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	33.33	44.35
HORVU5Hr1G107170.1	Barley	cytosol	38.18	43.45
CDX77974	Canola	cytosol	29.7	42.98
CDY29406	Canola	cytosol	30.91	42.86
CDY39355	Canola	cytosol	30.91	42.86
CDY53958	Canola	cytosol	30.3	42.73
CDY32970	Canola	cytosol	31.52	42.28
CDY43592	Canola	cytosol	31.52	42.28
CDY30901	Canola	cytosol	32.73	42.19
CDY27290	Canola	cytosol	32.73	42.19
CDX90669	Canola	cytosol	29.09	42.11
CDY28996	Canola	cytosol	29.09	42.11
CDY36029	Canola	cytosol	29.7	41.53
KRH01119	Soybean	cytosol	35.15	41.43
Solyc02g087630.2.1	Tomato	plastid	42.42	41.42
CDY45144	Canola	cytosol	32.12	41.41
GSMUA_Achr7P16980_001	Banana	cytosol	24.24	38.84
CDY23543	Canola	cytosol	31.52	37.14
CDY48387	Canola	cytosol	31.52	36.88
CDY23544	Canola	cytosol	32.73	36.49
CDY11645	Canola	cytosol, plastid	33.33	36.42
CDY34470	Canola	cytosol	12.73	36.21
CDY38768	Canola	cytosol, plastid	32.73	35.76
CDY48388	Canola	cytosol	30.91	34.69
CDY03743	Canola	extracellular	17.58	33.72
CDY34646	Canola	cytosol	25.45	33.33
GSMUA_Achr7P12220_001	Banana	cytosol	23.03	32.76
HORVU6Hr1G018190.1	Barley	mitochondrion	17.58	31.18
CDY70695	Canola	cytosol	24.85	29.71
CDY04457	Canola	cytosol	17.58	29.59
CDX72138	Canola	mitochondrion	26.06	28.86
CDY27215	Canola	mitochondrion	26.06	28.86
CDY67121	Canola	mitochondrion	25.45	27.63
CDY32015	Canola	mitochondrion	24.85	27.15
CDX67647	Canola	mitochondrion	24.85	27.15
CDX73940	Canola	cytosol	22.42	26.43
CDY35999	Canola	cytosol	21.82	25.71
CDY58647	Canola	cytosol	21.21	25.0
CDY22165	Canola	cytosol	21.82	24.66
CDX73752	Canola	cytosol, mitochondrion	29.7	22.27
CDY69984	Canola	plastid	21.21	18.82
CDY38116	Canola	plastid	21.21	18.72
CDY51539	Canola	plastid	19.39	17.78
CDY53739	Canola	plastid	19.39	17.68
CDY27984	Canola	nucleus	22.42	17.54
CDY28704	Canola	plastid	18.79	17.22
CDY11641	Canola	plastid	16.36	13.04
CDY00656	Canola	cytosol	23.64	10.46

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:A0A078J1T2	UniProt:A0A078J1T2	EnsemblPlants:CDY57101	ProteinID:CDY57101
ProteinID:CDY57101.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00020551001	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF243	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EDE03C	:	:	:

Description

BnaC04g56890DBnaC04g56890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1T2]

Coordinates

chrLK033547:+:9375..11092

Molecular Weight (calculated)

18548.1 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.423

Length

165 amino acids

Sequence
(BLAST)

001: METAGCVHRR PDKRAWVSLK CSYYPPHSTC SERERMGTVI SNLLGADEGN ESEHSGVTKL SSSAQWQLHF NGMKDSNQLL VIDFFASWCG PCKFIEPAFR
101: HMAVKFTDVS FVKVDVDELP EVAREFNVNA MPTFVLVKNG KEVDRIVGTK QAELENKVTK HRGGQ

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.