Factsheet for PGSC0003DMT400003564

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g02560.t01	Wine grape	cytosol	69.72	72.79
Solyc02g087630.2.1	Tomato	plastid	86.62	72.78
KRH01124	Soybean	endoplasmic reticulum	63.38	67.67
Bra028445.1-P	Field mustard	cytosol	61.97	66.17
CDX67442	Canola	cytosol	61.97	65.67
CDY65333	Canola	cytosol	61.27	65.41
AT5G39950.1	Thale cress	cytosol	60.56	64.66
PGSC0003DMT400045460	Potato	cytosol	29.58	61.76
Bra040318.1-P	Field mustard	cytosol	54.93	60.0
KRH40136	Soybean	endoplasmic reticulum	64.08	57.96
PGSC0003DMT400045450	Potato	cytosol	54.93	57.78
KRH40137	Soybean	endoplasmic reticulum	52.82	57.25
KRH01123	Soybean	cytosol	49.3	56.91
KRH40138	Soybean	cytosol, plastid	50.0	56.8
GSMUA_Achr2P17710_001	Banana	cytosol	46.48	51.97
HORVU5Hr1G107210.1	Barley	cytosol	47.18	51.15
TraesCS5D01G454800.1	Wheat	cytosol	47.18	51.15
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	47.18	51.15
TraesCS5A01G448200.1	Wheat	cytosol	47.18	51.15
Os03t0800700-01	Rice	plastid	47.18	50.0
GSMUA_Achr7P16980_001	Banana	cytosol	35.92	49.51
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	42.96	49.19
EER90722	Sorghum	cytosol	44.37	47.37
Zm00001d034491_P001	Maize	plastid	43.66	46.62
HORVU5Hr1G107170.1	Barley	cytosol	47.18	46.21
CDY57101	Canola	cytosol	53.52	46.06
PGSC0003DMT400009306	Potato	cytosol	38.03	45.76
KRH01119	Soybean	cytosol	45.07	45.71
Os07t0190800-01	Rice	cytosol	43.66	44.93
PGSC0003DMT400009623	Potato	cytosol	37.32	43.09
CDY37032	Canola	cytosol	54.93	41.71
PGSC0003DMT400055905	Potato	cytosol	32.39	36.8
GSMUA_Achr7P12220_001	Banana	cytosol	28.17	34.48
PGSC0003DMT400076843	Potato	cytosol	17.61	30.49
HORVU6Hr1G018190.1	Barley	mitochondrion	19.01	29.03
PGSC0003DMT400059108	Potato	cytosol	27.46	28.06
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	30.28	23.63

Protein Annotations

MapMan:10.6.1	EntrezGene:102595471	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0005886
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016020
GO:GO:0016671	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M0ZLX3
PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400001410	PGSC:PGSC0003DMG400001410	EnsemblPlants:PGSC0003DMT400003564	PIRSF:PIRSF000077	PRINTS:PR00421
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002962D60	RefSeq:XP_006338484.1	:	:

Description

Thioredoxin H [Source:PGSC_GENE;Acc:PGSC0003DMG400001410]

Coordinates

chr2:+:46464221..46465228

Molecular Weight (calculated)

15597.7 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.206

Length

142 amino acids

Sequence
(BLAST)

001: MGSYVSSFLG GGEAQAATEV SGSPSEPSRV IAFHSSNRWQ LHFNSSKQLN KLIVVDFAAA WCGPCKFMEP AINAMASKYT DVDFVKIDVD ELSDVAKEFG
101: VQAMPTFLLL KQGKEVERVV GAKKDELEKK ILKHREAPKY AA

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.