Factsheet for PGSC0003DMT400055905

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079960.2.1	Tomato	cytosol	96.0	96.0
VIT_00s0532g00030.t01	Wine grape	cytosol	66.4	65.87
AT1G11530.1	Thale cress	cytosol	59.2	62.71
Bra031769.1-P	Field mustard	cytosol	63.2	62.7
KRH10686	Soybean	cytosol	61.6	62.1
CDY34646	Canola	cytosol	62.4	61.9
KRH21649	Soybean	cytosol, plastid	60.0	60.0
KRH22228	Soybean	cytosol	58.4	59.84
VIT_19s0014g05090.t01	Wine grape	cytosol	60.0	59.52
KRH27111	Soybean	nucleus	55.2	54.76
KRH55615	Soybean	cytosol	55.2	54.76
GSMUA_Achr9P30140_001	Banana	cytosol	58.4	54.48
KRH25890	Soybean	nucleus	54.4	53.97
KRH33304	Soybean	cytosol	52.0	51.59
GSMUA_Achr5P26380_001	Banana	cytosol	51.2	49.61
Os04t0629500-01	Rice	cytosol	52.0	48.87
OQU82388	Sorghum	cytosol	50.4	48.84
Zm00001d026368_P001	Maize	cytosol, extracellular	48.8	47.29
PGSC0003DMT400045460	Potato	cytosol	23.2	42.65
TraesCS2A01G480300.1	Wheat	cytosol	45.6	41.01
TraesCS2D01G479600.1	Wheat	cytosol	45.6	41.01
HORVU2Hr1G107990.1	Barley	cytosol	44.8	40.58
TraesCS2B01G505100.1	Wheat	cytosol	44.8	40.29
PGSC0003DMT400009306	Potato	cytosol	36.0	38.14
PGSC0003DMT400076843	Potato	cytosol	24.8	37.8
PGSC0003DMT400045450	Potato	cytosol	36.0	33.33
PGSC0003DMT400003564	Potato	plastid	36.8	32.39
PGSC0003DMT400009623	Potato	cytosol	30.4	30.89
PGSC0003DMT400059108	Potato	cytosol	32.0	28.78
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	25.6	17.58

Protein Annotations

MapMan:10.6.1	EntrezGene:102602362	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	UniProt:M1BYR1	PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400021716	PGSC:PGSC0003DMG400021716
EnsemblPlants:PGSC0003DMT400055905	PIRSF:PIRSF000077	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF242	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000295CBDE	RefSeq:XP_006365880.1	RefSeq:XP_006365881.1

Description

Thioredoxin h [Source:PGSC_GENE;Acc:PGSC0003DMG400021716]

Coordinates

chr2:+:35666529..35670669

Molecular Weight (calculated)

14019.0 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.174

Length

125 amino acids

Sequence
(BLAST)

001: MEVQEQGTKS RVVKVDSKES WDFHVNQATL QGCPIVAHFT AVWCIPSVAM KPFMEELASM YHNMSFLTVD VDEVKEVARK YEVKAMPTFL LLKGGVPVDK
101: IVGANPDEMK KRIHSLAQSN PTDIP

Best Arabidopsis Sequence Match ( AT1G11530.1 )
(BLAST)

001: MARVVKIDSA ESWNFYVSQA KNQNCPIVAH FTALWCIPSV FMNSFFEELA FNYKDALFLI VDVDEVKEVA SQLEVKAMPT FLFLKDGNAM DKLVGANPDE
101: IKKRVDGFVQ SSRVVHIA

Arabidopsis Description

CXXS1Thioredoxin-like protein CXXS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.