Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400026053 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08710.1 | PGSC0003DMT400026053 | AT3G02470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g015820.2.1 | Tomato | plastid | 98.78 | 52.6 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 73.17 | 43.17 |
| KRH00477 | Soybean | cytosol | 70.73 | 41.73 |
| Bra040055.1-P | Field mustard | cytosol | 68.29 | 40.88 |
| CDY35999 | Canola | cytosol | 68.29 | 40.0 |
| CDY58647 | Canola | cytosol | 68.29 | 40.0 |
| KRH09556 | Soybean | cytosol | 65.85 | 39.42 |
| AT3G08710.1 | Thale cress | cytosol | 67.07 | 39.29 |
| CDX73940 | Canola | cytosol | 65.85 | 38.57 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 65.85 | 38.3 |
| CDY22165 | Canola | cytosol | 67.07 | 37.67 |
| Os01t0168200-01 | Rice | plasma membrane | 59.76 | 37.4 |
| Zm00001d037499_P001 | Maize | cytosol | 59.76 | 36.84 |
| PGSC0003DMT400045460 | Potato | cytosol | 30.49 | 36.76 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 60.98 | 35.97 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 57.32 | 35.88 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 57.32 | 35.88 |
| TraesCS1D01G114000.1 | Wheat | cytosol | 57.32 | 35.88 |
| KRH64869 | Soybean | cytosol | 65.85 | 35.29 |
| Os05t0169000-01 | Rice | cytosol | 56.1 | 34.85 |
| EES19112 | Sorghum | cytosol | 56.1 | 34.33 |
| Zm00001d039710_P004 | Maize | cytosol | 59.76 | 34.03 |
| KXG31771 | Sorghum | cytosol | 62.2 | 34.0 |
| Bra001346.1-P | Field mustard | cytosol | 65.85 | 32.93 |
| KRH40706 | Soybean | mitochondrion | 67.07 | 32.54 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 57.32 | 32.19 |
| PGSC0003DMT400059108 | Potato | cytosol | 51.22 | 30.22 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 54.88 | 27.27 |
| PGSC0003DMT400009306 | Potato | cytosol | 39.02 | 27.12 |
| CDY27984 | Canola | nucleus | 68.29 | 26.54 |
| PGSC0003DMT400055905 | Potato | cytosol | 37.8 | 24.8 |
| PGSC0003DMT400009623 | Potato | cytosol | 36.59 | 24.39 |
| PGSC0003DMT400045450 | Potato | cytosol | 34.15 | 20.74 |
| PGSC0003DMT400003564 | Potato | plastid | 30.49 | 17.61 |
| CDY00656 | Canola | cytosol | 67.07 | 14.75 |
| PGSC0003DMT400059966 | Potato | cytosol, extracellular, plastid | 25.61 | 11.54 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006662 |
| GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0016020 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 | UniProt:M1CXH6 |
| PFAM:PF00085 | EnsemblPlantsGene:PGSC0003DMG400029887 | PGSC:PGSC0003DMG400029887 | EnsemblPlants:PGSC0003DMT400076843 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 |
| SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI000294D929 | : |
Description
Thioredoxin h [Source:PGSC_GENE;Acc:PGSC0003DMG400029887]
Coordinates
chr9:+:19216467..19216971
Molecular Weight (calculated)
9331.1 Da
IEP (calculated)
4.241
GRAVY (calculated)
-0.224
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MISPFYCELS EKYLSLMFLT VDVDELTEFS SSWDIKATPT FFFLKDGEQI DKLVGANKPE LQKKITTVAD THVACEPQPQ PQ
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.