Factsheet for GSMUA_Achr5P27870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P18460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	GSMUA_Achr9P18460_001	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01700_001	Banana	cytosol	81.56	82.73
TraesCS1D01G114000.1	Wheat	cytosol	69.5	74.81
TraesCS1B01G132600.1	Wheat	cytosol	69.5	74.81
TraesCS1A01G112400.1	Wheat	cytosol	69.5	74.81
Os01t0168200-01	Rice	plasma membrane	68.09	73.28
Zm00001d037499_P001	Maize	cytosol	68.09	72.18
Os05t0169000-01	Rice	cytosol	66.67	71.21
EES19112	Sorghum	cytosol	65.25	68.66
KXG31771	Sorghum	cytosol	70.92	66.67
Zm00001d039710_P004	Maize	cytosol	67.38	65.97
PGSC0003DMT400076843	Potato	cytosol	38.3	65.85
VIT_08s0040g00020.t01	Wine grape	cytosol	64.54	65.47
HORVU1Hr1G024700.4	Barley	cytosol	67.38	65.07
KRH00477	Soybean	cytosol	62.41	63.31
CDY58647	Canola	cytosol	62.41	62.86
Bra040055.1-P	Field mustard	cytosol	59.57	61.31
AT3G08710.1	Thale cress	cytosol	60.28	60.71
CDY35999	Canola	cytosol	60.28	60.71
CDX73940	Canola	cytosol	60.28	60.71
KRH09556	Soybean	cytosol	58.16	59.85
Solyc09g015820.2.1	Tomato	plastid	65.25	59.74
CDY22165	Canola	cytosol	60.28	58.22
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	65.96	56.36
KRH64869	Soybean	cytosol	58.16	53.59
Bra001346.1-P	Field mustard	cytosol	60.28	51.83
KRH40706	Soybean	mitochondrion	60.99	50.89
PGSC0003DMT400059108	Potato	cytosol	47.52	48.2
Solyc03g095500.2.1	Tomato	cytosol	46.81	47.48
GSMUA_Achr4P22400_001	Banana	cytosol, unclear	35.46	43.86
Bra014691.1-P	Field mustard	cytosol, mitochondrion	41.13	43.28
CDX67647	Canola	mitochondrion	45.39	42.38
CDY32015	Canola	mitochondrion	45.39	42.38
CDY70695	Canola	cytosol	41.13	42.03
CDY67121	Canola	mitochondrion	44.68	41.45
Bra007245.1-P	Field mustard	plastid	41.13	41.43
CDY27984	Canola	nucleus	60.28	40.28
CDX72138	Canola	mitochondrion	42.55	40.27
CDY27215	Canola	mitochondrion	42.55	40.27
AT3G56420.2	Thale cress	mitochondrion	43.97	40.26
AT2G40790.1	Thale cress	cytosol	43.97	40.26
GSMUA_Achr2P17610_001	Banana	cytosol	30.5	37.72
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	30.5	34.68
GSMUA_Achr2P17710_001	Banana	cytosol	30.5	33.86
GSMUA_Achr9P30140_001	Banana	cytosol	30.5	32.09
GSMUA_Achr7P16980_001	Banana	cytosol	23.4	32.04
GSMUA_Achr5P26380_001	Banana	cytosol	28.37	31.01
GSMUA_Achr7P12220_001	Banana	cytosol	22.7	27.59
CDY00656	Canola	cytosol	60.28	22.79
GSMUA_Achr8P01040_001	Banana	plastid	26.95	21.23
GSMUA_Achr11P...	Banana	mitochondrion	14.89	13.04

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G27870_001	EnsemblPlants:GSMUA_Achr5P27870_001	EnsemblPlants:GSMUA_Achr5T27870_001	InterPro:IPR013766
UniProt:M0T2B2	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI000295A6E7	:	:	:	:

Description

Thioredoxin H4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27870_001]

Coordinates

chr5:+:28293573..28296796

Molecular Weight (calculated)

15694.9 Da

IEP (calculated)

4.966

GRAVY (calculated)

-0.248

Length

141 amino acids

Sequence
(BLAST)

001: MGNCSGKKGA GSDLEEEIDF RGGNVHVITS KESWDQKILE ANKDGKIVVA NFSASWCGPC RMIAPLYKEL SQKYPSLMFL TIDVDELMEF SSSWDIRATP
101: TFLFLKDGQQ LDKLIGANRP ELEKKIIMIV DSLVQCSKGS N

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.