Factsheet for GSMUA_Achr9P18460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
plasma membrane 1
peroxisome 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g00990.t01	Wine grape	cytosol	49.65	58.61
KRH45175	Soybean	cytosol	48.71	57.66
PGSC0003DMT400019451	Potato	cytosol	48.71	57.5
AT3G25570.2	Thale cress	cytosol	47.06	57.31
KRH01466	Soybean	cytosol, golgi, nucleus	48.0	56.82
PGSC0003DMT400041339	Potato	cytosol	48.24	56.47
Solyc05g010420.1.1	Tomato	cytosol	47.76	56.39
PGSC0003DMT400026053	Potato	cytosol	47.76	56.08
KRH75226	Soybean	cytosol	46.35	55.81
Solyc01g010050.2.1	Tomato	cytosol	47.76	55.77
Solyc02g089610.1.1	Tomato	cytosol	47.29	55.52
KRH71078	Soybean	cytosol	46.12	55.21
VIT_14s0083g00580.t01	Wine grape	cytosol	52.24	54.81
CDY71278	Canola	cytosol	45.65	53.44
CDY57536	Canola	cytosol	45.41	53.02
Bra039176.1-P	Field mustard	cytosol	45.41	53.02
AT3G02470.1	Thale cress	cytosol	45.65	53.01
AT5G15950.2	Thale cress	cytosol	44.71	52.49
CDX69487	Canola	cytosol	45.41	52.45
Bra008662.1-P	Field mustard	cytosol	45.41	52.45
CDY26478	Canola	cytosol	45.18	52.32
CDX91992	Canola	cytosol	45.18	52.32
CDX74257	Canola	cytosol	45.18	52.17
CDX70666	Canola	cytosol	44.0	51.52
Bra021458.1-P	Field mustard	nucleus	50.59	50.12
CDY71710	Canola	cytosol, nucleus, plastid	50.59	50.12
GSMUA_Achr9P13400_001	Banana	cytosol	40.94	48.33
Bra001046.1-P	Field mustard	nucleus	50.35	48.2
Bra006334.1-P	Field mustard	cytosol	34.12	48.01
CDX78666	Canola	cytosol	33.88	47.68
GSMUA_Achr3P04790_001	Banana	cytosol	41.41	47.19
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	41.88	46.48
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	43.29	46.46
CDY43235	Canola	cytosol, plastid	49.65	45.57
AT3G17717.1	Thale cress	cytosol	13.18	44.09
GSMUA_Achr3P22890_001	Banana	cytosol	32.24	40.9
GSMUA_Achr11P...	Banana	cytosol	32.47	40.35
Bra021271.1-P	Field mustard	cytosol	30.35	39.45
CDY49835	Canola	cytosol	30.12	39.14
CDY63462	Canola	plastid	9.41	25.97
CDY33352	Canola	plastid	9.41	25.97
CDX99815	Canola	cytosol	9.88	22.83
CDY17081	Canola	cytosol	9.88	22.46
CDY06772	Canola	nucleus	8.0	20.86

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	InterPro:AdoMetDC_leader
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G18460_001	EnsemblPlants:GSMUA_Achr9P18460_001	EnsemblPlants:GSMUA_Achr9T18460_001
UniProt:M0U1F3	PFAM:PF01536	PFAM:PF08132	PIRSF:PIRSF001355	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI0002957670	SEG:seg

Description

S-adenosylmethionine decarboxylase proenzyme [Source:GMGC_GENE;Acc:GSMUA_Achr9G18460_001]

Coordinates

chr9:+:13041123..13042778

Molecular Weight (calculated)

47352.3 Da

IEP (calculated)

7.116

GRAVY (calculated)

-0.194

Length

425 amino acids

Sequence
(BLAST)

001: MDAKRGDRSG SNYSNYESPP VYNAEEIRPH GGIKRFRSAC YSNVKRTRLH YSLDLICIHT VSAHLCDCFF RYPTEMASPV SAIGFEGFEK RLEISFSGHG
101: RRQDLRSLSM AQLDTILRPA ECTIVAALSN KFVDTYILSE SSLFIYPHRI IIKTCGTTRL LLSIPPLLHL AADLSLSVAS VRYTRGGFRF PEAQPFPHRS
201: FAEEVAVLDR HFTRLGCSSK AYSMSSSLKS QQWHVYSATA ARSDRPLYTL EMCMMGLDRK RAAVFYGKQH YTASEMTIAS GISDILPGSQ ICEFQFDPCG
301: YSMNSVEGAA ISTIHVTPED GFSYASFEAM GYDAEVIDLG RLITRVLACF RPAEFSIAVE TDGVGEESPR GAALDVSGYV SGERRFKEMG RGSVVYQSFK
401: ACDCESPTSI LKNLWDDMDP HRSNL

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.