Factsheet for VIT_14s0083g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g00990.t01	Wine grape	cytosol	67.9	76.39
Solyc02g089610.1.1	Tomato	cytosol	62.22	69.61
PGSC0003DMT400026053	Potato	cytosol	61.98	69.34
KRH01466	Soybean	cytosol, golgi, nucleus	60.49	68.25
KRH45175	Soybean	cytosol	60.0	67.69
CDY71278	Canola	cytosol	56.54	63.09
AT3G02470.1	Thale cress	cytosol	56.79	62.84
Bra039176.1-P	Field mustard	cytosol	55.8	62.09
CDY57536	Canola	cytosol	55.8	62.09
AT5G15950.2	Thale cress	cytosol	55.31	61.88
Bra008662.1-P	Field mustard	cytosol	56.05	61.68
CDX74257	Canola	cytosol	56.05	61.68
CDX91992	Canola	cytosol	55.8	61.58
CDY26478	Canola	cytosol	55.06	60.76
CDY71710	Canola	cytosol, nucleus, plastid	64.2	60.61
Bra021458.1-P	Field mustard	nucleus	64.2	60.61
CDX69487	Canola	cytosol	55.06	60.6
CDX70666	Canola	cytosol	53.58	59.78
Bra001046.1-P	Field mustard	nucleus	64.2	58.56
Bra006334.1-P	Field mustard	cytosol	42.72	57.28
CDX78666	Canola	cytosol	42.47	56.95
CDY43235	Canola	cytosol, plastid	63.21	55.29
GSMUA_Achr9P18460_001	Banana	cytosol	54.81	52.24
VIT_11s0037g00950.t01	Wine grape	cytosol	46.91	49.1
VIT_05s0020g02370.t01	Wine grape	cytosol	37.04	42.86
CDY33352	Canola	plastid	15.31	40.26
CDY63462	Canola	plastid	15.06	39.61
CDX99815	Canola	cytosol	15.06	33.15
CDY06772	Canola	nucleus	13.33	33.13
CDY17081	Canola	cytosol	15.06	32.62

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100265287	wikigene:100265287	Gene3D:3.30.360.50	Gene3D:3.60.90.10
MapMan:8.2.1	EMBL:AJ427634	EMBL:AM425654	InterPro:AdoMetDC_leader	ProteinID:CAD20741	ProteinID:CAD20741.1
ProteinID:CAN75613	ProteinID:CAN75613.1	ProteinID:CCB44065	ProteinID:CCB44065.1	UniProt:F6GVT0	EMBL:FN594955
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597
GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0008792	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	PFAM:PF01536	PFAM:PF08132	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	EntrezGene:SAMDC
wikigene:SAMDC	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000210895F	ArrayExpress:VIT_14s0083g00580	EnsemblPlantsGene:VIT_14s0083g00580
EnsemblPlants:VIT_14s0083g00580.t01	RefSeq:XP_002282704	RefSeq:XP_002282704.1	RefSeq:XP_002282708	RefSeq:XP_002282708.1	RefSeq:XP_002282716
RefSeq:XP_002282716.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:22620849..22623743

Molecular Weight (calculated)

45153.7 Da

IEP (calculated)

5.027

GRAVY (calculated)

-0.282

Length

405 amino acids

Sequence
(BLAST)

001: MESKCAKKKS SSSKSMFYEA PLGYSIEDIR PNGGIKKFRT AAYSNMALPV SAIGFEGYEK RLEISFFEPG IFADPVGMGL RSLSKTQLDE ILEPAECTIV
101: SSLSNDDVDS YVLSESSLFV YPYKIIIKTC GTTKLLLSIP PILKLANSLD LSVRSVKYTR GSFIFPGAQS FPHRNFSEEV VELDGHFGKL GAGSKAYMMG
201: SHDKPQKWHV YTAAAEFTGR LDPVYTLEMC MTGLDRKKAS VFYKTDTSSA AVMTENSGIR KILPNSEICD FEFDPCGYSM NAIEEDAIST IHVTPEDGFS
301: YASFEAMGYN LNDDSLTQML ERVLDCFQPA HFSVALHADV EGKKLEYDFP LDVMGYYCEG RSYEGLGKGG SIIYHSFMKS EECGSPRSIL KWRENEEEEQ
401: VLKKK

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.