CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78666	Canola	cytosol	73.0	87.75
AT5G15950.2	Thale cress	cytosol	84.3	84.53
CDY26478	Canola	cytosol	84.3	83.38
CDX69487	Canola	cytosol	83.2	82.07
CDY71278	Canola	cytosol	78.24	78.24
CDY57536	Canola	cytosol	77.96	77.75
CDX74257	Canola	cytosol	77.14	76.09
CDX91992	Canola	cytosol	76.86	76.02
CDY71710	Canola	cytosol, nucleus, plastid	78.24	66.2
CDY43235	Canola	cytosol, plastid	76.86	60.26
KRH01466	Soybean	cytosol, golgi, nucleus	59.5	60.17
Solyc02g089610.1.1	Tomato	cytosol	59.5	59.67
KRH45175	Soybean	cytosol	58.95	59.61
PGSC0003DMT400026053	Potato	cytosol	59.23	59.39
VIT_14s0083g00580.t01	Wine grape	cytosol	59.78	53.58
TraesCS6A01G219500.1	Wheat	cytosol	49.59	46.39
TraesCS6D01G202500.1	Wheat	cytosol	49.59	46.39
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	49.86	46.17
HORVU6Hr1G056110.1	Barley	cytosol	49.31	46.02
TraesCS6B01G249000.1	Wheat	cytosol	49.04	45.88
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	49.31	45.66
Os09t0424300-03	Rice	cytosol	49.31	45.66
EER98924	Sorghum	cytosol	49.59	45.57
Zm00001d020543_P001	Maize	cytosol	49.04	45.41
Os02t0611200-01	Rice	cytosol	49.31	45.32
TraesCS5A01G221200.1	Wheat	cytosol	49.04	45.18
Zm00001d025773_P002	Maize	cytosol, plastid	48.76	45.04
TraesCS2B01G372900.1	Wheat	cytosol	48.48	45.01
EES05409	Sorghum	plastid	49.31	44.97
Os04t0498600-01	Rice	cytosol	48.76	44.47
Zm00001d051056_P001	Maize	plastid	48.21	44.3
GSMUA_Achr9P18460_001	Banana	cytosol	51.52	44.0
Zm00001d003157_P001	Maize	cytosol	48.21	43.75
TraesCS2D01G352900.1	Wheat	cytosol	47.66	42.3
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	48.21	42.17
HORVU5Hr1G064040.8	Barley	cytosol	49.59	40.72
HORVU2Hr1G086140.5	Barley	cytosol	48.48	39.11
OQU81878	Sorghum	cytosol	48.76	38.9
CDX92572	Canola	cytosol	36.91	38.73
CDY13929	Canola	cytosol	36.64	38.44
CDY49835	Canola	cytosol	34.44	38.23
CDX70856	Canola	cytosol	36.36	38.04
CDX88906	Canola	cytosol	36.36	38.04
CDY47189	Canola	cytosol	34.99	36.49
CDY54323	Canola	cytosol, nucleus, plastid	8.26	27.03
CDX85819	Canola	cytosol	8.54	24.22
CDY63462	Canola	plastid	9.64	22.73
CDY33352	Canola	plastid	9.37	22.08
CDY06772	Canola	nucleus	9.37	20.86
CDX99815	Canola	cytosol	8.82	17.39
CDY17081	Canola	cytosol	8.82	17.11
CDX84130	Canola	cytosol	5.23	15.2

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:A0A078C142
EnsemblPlants:CDX70666	ProteinID:CDX70666	ProteinID:CDX70666.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0006139	GO:GO:0006557	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00140522001	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniPathway:UPA00331	UniParc:UPI0004EBE8D0	SEG:seg	:

Description

BnaC03g07500D

Coordinates

chrLK031791:+:1445701..1446792

Molecular Weight (calculated)

40610.8 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.251

Length

363 amino acids

Sequence
(BLAST)

001: MSVSSIGFEG YEKRLEVTFF EPSIFLDTQG LGLRALTKSQ IDEILQPAEC TIVSSLSNDH LDSYVLSESS LFIFPYKIII KTCGTTKLLL SIEPLLRLAN
101: ELSLDVESVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGHF TKLGLSSVAY LMGKDDETKK WHVYSASSPA KNSNNSNVYT LEMCMTGLDK DKASMFYKNE
201: SSFMTDNSGI RKILPQSQIC DFEFEPCGYS MNSVEDEAIS TIHVTPEDGF SYASFEAVGY DFTTMHLSLL VSRVLTCFEA KQFSVAIYSS IAQKSYYKGL
301: CVELDDYGCR ETTMESLGEE RGTVMYQTFE KLGRYCGSPR STLKCEWSSN SSCTSEDDKE EGT

Best Arabidopsis Sequence Match ( AT5G15950.1 )
(BLAST)

001: MAMSAIGFEG YEKRLEVTFF EPGLFLDTQG KGLRALAKSQ IDEILQPAEC TIVSSLSNDQ LDSYVLSESS LFIFPYKIVI KTCGTTKLLL SIEPLLRLAG
101: ELSLDVKAVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGHF AKLGLSSVAY LMGNDDETKK WHVYSASSAN SNNKNNVYTL EMCMTGLDKD KASVFYKNES
201: SSAGSMTDNS GIRKILPQSQ ICDFEFEPCG YSMNSIEGDA ISTIHVTPED GFSYASFEAV GYDFTTMDLS HLVSKVLTCF KPKQFSVAVH STVAQKSYDS
301: GLSVDLDDYG CKESTMESLG EERGTVMYQR FEKLGRYCGS PRSTLKCEWS SNSSCNSEDE KE

Arabidopsis Description

SAMDC2S-adenosylmethionine decarboxylase proenzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.