Factsheet for Zm00001d051056_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 3
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, extracellular, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05409	Sorghum	plastid	86.08	85.43
Os02t0611200-01	Rice	cytosol	78.99	78.99
TraesCS6B01G249000.1	Wheat	cytosol	74.18	75.52
TraesCS6D01G202500.1	Wheat	cytosol	73.92	75.26
TraesCS6A01G219500.1	Wheat	cytosol	73.92	75.26
HORVU6Hr1G056110.1	Barley	cytosol	73.92	75.06
Zm00001d003157_P001	Maize	cytosol	72.91	72.0
Zm00001d025773_P002	Maize	cytosol, plastid	70.89	71.25
GSMUA_Achr9P13400_001	Banana	cytosol	62.28	68.33
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	66.33	66.16
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	62.78	64.75
GSMUA_Achr3P04790_001	Banana	cytosol	58.99	62.47
Zm00001d020543_P001	Maize	cytosol	61.77	62.24
VIT_11s0037g00950.t01	Wine grape	cytosol	54.68	55.81
Solyc01g010050.2.1	Tomato	cytosol	51.14	55.49
PGSC0003DMT400041339	Potato	cytosol	50.89	55.37
AT3G25570.2	Thale cress	cytosol	48.61	55.01
PGSC0003DMT400026053	Potato	cytosol	50.13	54.7
PGSC0003DMT400019451	Potato	cytosol	49.62	54.44
Solyc02g089610.1.1	Tomato	cytosol	49.62	54.14
Solyc05g010420.1.1	Tomato	cytosol	48.86	53.61
KRH02991	Soybean	cytosol	45.82	50.56
AT5G15950.2	Thale cress	cytosol	46.33	50.55
Bra008662.1-P	Field mustard	cytosol	46.84	50.27
CDX91992	Canola	cytosol	46.33	49.86
CDY71278	Canola	cytosol	45.82	49.86
CDX69487	Canola	cytosol	46.33	49.73
CDY26478	Canola	cytosol	46.08	49.59
CDX74257	Canola	cytosol	46.08	49.46
Bra039176.1-P	Field mustard	cytosol	45.57	49.45
CDX78666	Canola	cytosol	37.72	49.34
Bra006334.1-P	Field mustard	cytosol	37.72	49.34
CDY57536	Canola	cytosol	45.32	49.18
AT3G02470.1	Thale cress	cytosol	45.32	48.91
CDX70666	Canola	cytosol	44.3	48.21
Bra021458.1-P	Field mustard	nucleus	45.82	42.19
CDY71710	Canola	cytosol, nucleus, plastid	45.82	42.19
Bra001046.1-P	Field mustard	nucleus	46.33	41.22
AT3G17717.1	Thale cress	cytosol	12.91	40.16
CDY43235	Canola	cytosol, plastid	45.82	39.09
Bra021271.1-P	Field mustard	cytosol	28.61	34.56
CDY49835	Canola	cytosol	28.1	33.95
CDY63462	Canola	plastid	7.59	19.48
CDY33352	Canola	plastid	7.34	18.83
CDY06772	Canola	nucleus	7.59	18.4
CDX99815	Canola	cytosol	7.34	15.76
CDY17081	Canola	cytosol	7.34	15.51

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100283320	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
ProteinID:AQK53523.1	UniProt:B6TH27	EMBL:EU964292	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000160B76C	EnsemblPlantsGene:Zm00001d051056	EnsemblPlants:Zm00001d051056_P001
EnsemblPlants:Zm00001d051056_T001	SEG:seg	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme

Coordinates

chr4:+:139235984..139238663

Molecular Weight (calculated)

43204.4 Da

IEP (calculated)

4.613

GRAVY (calculated)

-0.032

Length

395 amino acids

Sequence
(BLAST)

001: MAVLQVAAAA PPPVSVIGFE GFEKRLEISF SEAPVLADPS GRGLRALSRA QIDSVLDLAR CTIVSELSNE DFDSYVLSES SLFVYPYKIV IKTCGTTKLL
101: LAIPRILELA EELLLPLAAV KYSRGTFIFP EAQPSPHKNF ADEVAFLNRF FGGLKSGGNA YVIGDSAKPG QKWHVYYAAE HPEEPVVTLE MCMTGLDKKK
201: ASVFFKTTAD GYSLCAKEMT KLSGISDIIP EMEICDFDFE PCGYSMNAVH GPALSTIHVT PEDGFSYASY EVMGFNPGSF SYGDLVKRVL RCFGPTEFSV
301: AVTIFGDRDN AKTWGTKLDA EAYACSNMVE QVLPFGGLLI YQSFTVTAET THGSPRSVLH DFAGDIVKNR SESDAPWEAD AVDESEERDV KKMKC

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.