Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71078 | Soybean | cytosol | 69.05 | 67.89 |
| KRH75226 | Soybean | cytosol | 68.48 | 67.71 |
| Solyc05g010420.1.1 | Tomato | cytosol | 68.77 | 66.67 |
| PGSC0003DMT400019451 | Potato | cytosol | 68.48 | 66.39 |
| VIT_01s0010g00990.t01 | Wine grape | cytosol | 67.34 | 65.28 |
| PGSC0003DMT400041339 | Potato | cytosol | 67.34 | 64.74 |
| Solyc01g010050.2.1 | Tomato | cytosol | 67.05 | 64.29 |
| AT5G15950.2 | Thale cress | cytosol | 62.75 | 60.5 |
| AT3G02470.1 | Thale cress | cytosol | 62.18 | 59.29 |
| HORVU6Hr1G056110.1 | Barley | cytosol | 55.59 | 49.87 |
| TraesCS6B01G249000.1 | Wheat | cytosol | 55.3 | 49.74 |
| Os02t0611200-01 | Rice | cytosol | 56.16 | 49.62 |
| Zm00001d025773_P002 | Maize | cytosol, plastid | 55.59 | 49.36 |
| TraesCS6D01G202500.1 | Wheat | cytosol | 54.73 | 49.23 |
| TraesCS6A01G219500.1 | Wheat | cytosol | 54.73 | 49.23 |
| Zm00001d051056_P001 | Maize | plastid | 55.01 | 48.61 |
| Os04t0498600-01 | Rice | cytosol | 55.3 | 48.49 |
| TraesCS2B01G372900.1 | Wheat | cytosol | 54.15 | 48.34 |
| Zm00001d003157_P001 | Maize | cytosol | 55.01 | 48.0 |
| EES05409 | Sorghum | plastid | 54.44 | 47.74 |
| GSMUA_Achr9P18460_001 | Banana | cytosol | 57.31 | 47.06 |
| Os09t0424300-03 | Rice | cytosol | 52.44 | 46.68 |
| TraesCS5D01G228900.1 | Wheat | cytosol, nucleus, peroxisome | 52.15 | 46.43 |
| TraesCS5B01G220000.1 | Wheat | cytosol, nucleus, peroxisome | 52.15 | 46.43 |
| EER98924 | Sorghum | cytosol | 52.44 | 46.33 |
| TraesCS5A01G221200.1 | Wheat | cytosol | 52.15 | 46.19 |
| Zm00001d020543_P001 | Maize | cytosol | 51.29 | 45.66 |
| TraesCS2A01G355400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 54.15 | 45.54 |
| TraesCS2D01G352900.1 | Wheat | cytosol | 53.3 | 45.48 |
| OQU81878 | Sorghum | cytosol | 55.87 | 42.86 |
| AT5G18930.1 | Thale cress | cytosol | 42.41 | 42.65 |
| HORVU2Hr1G086140.5 | Barley | cytosol | 54.44 | 42.22 |
| HORVU5Hr1G064040.8 | Barley | cytosol | 52.44 | 41.4 |
| AT3G17717.1 | Thale cress | cytosol | 14.61 | 40.16 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.30.360.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | EntrezGene:822144 |
| ProteinID:AEE77029.1 | ProteinID:AEE77030.1 | ArrayExpress:AT3G25570 | EnsemblPlantsGene:AT3G25570 | RefSeq:AT3G25570 | TAIR:AT3G25570 |
| RefSeq:AT3G25570-TAIR-G | EnsemblPlants:AT3G25570.2 | TAIR:AT3G25570.2 | Unigene:At.49653 | ProteinID:BAB01327.1 | EMBL:BT012654 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006557 | GO:GO:0006596 | GO:GO:0006597 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016829 |
| GO:GO:0016831 | RefSeq:NP_001189972.1 | RefSeq:NP_189184.1 | PFAM:PF01536 | PIRSF:PIRSF001355 | PO:PO:0000293 |
| ScanProsite:PS01336 | PANTHER:PTHR11570 | PANTHER:PTHR11570:SF15 | UniProt:Q9LSU6 | InterPro:S-AdoMet_deCO2ase_CS | InterPro:S-AdoMet_deCO2ase_core |
| InterPro:S-AdoMet_decarboxylase | SUPFAM:SSF56276 | TIGRFAMs:TIGR00535 | UniParc:UPI00000A35C7 | SEG:seg | : |
Description
SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
Coordinates
chr3:-:9287178..9289330
Molecular Weight (calculated)
38292.3 Da
IEP (calculated)
4.458
GRAVY (calculated)
0.041
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.