Factsheet for TraesCS2D01G352900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G372900.1	Wheat	cytosol	92.18	96.42
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	92.91	91.57
HORVU2Hr1G086140.5	Barley	cytosol	95.35	86.67
Os04t0498600-01	Rice	cytosol	76.77	78.89
Zm00001d003157_P001	Maize	cytosol	76.53	78.25
Zm00001d025773_P002	Maize	cytosol, plastid	72.13	75.06
OQU81878	Sorghum	cytosol	79.71	71.65
TraesCS6D01G202500.1	Wheat	cytosol	66.99	70.62
GSMUA_Achr9P13400_001	Banana	cytosol	57.46	65.28
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	62.35	64.39
GSMUA_Achr3P04790_001	Banana	cytosol	57.7	63.27
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	60.15	62.76
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	58.68	62.66
Solyc02g089610.1.1	Tomato	cytosol	47.19	53.31
Solyc01g010050.2.1	Tomato	cytosol	47.43	53.3
AT3G25570.2	Thale cress	cytosol	45.48	53.3
PGSC0003DMT400041339	Potato	cytosol	47.19	53.17
PGSC0003DMT400026053	Potato	cytosol	46.94	53.04
PGSC0003DMT400019451	Potato	cytosol	46.45	52.78
VIT_11s0037g00950.t01	Wine grape	cytosol	49.88	52.71
Solyc05g010420.1.1	Tomato	cytosol	45.97	52.22
AT5G15950.2	Thale cress	cytosol	44.01	49.72
KRH02991	Soybean	cytosol	43.03	49.16
CDY71278	Canola	cytosol	43.52	49.04
Bra008662.1-P	Field mustard	cytosol	44.01	48.91
AT3G02470.1	Thale cress	cytosol	43.52	48.63
CDX74257	Canola	cytosol	43.52	48.37
Bra039176.1-P	Field mustard	cytosol	43.03	48.35
CDY57536	Canola	cytosol	43.03	48.35
CDY26478	Canola	cytosol	43.28	48.23
CDX91992	Canola	cytosol	43.28	48.23
CDX69487	Canola	cytosol	43.28	48.1
Bra006334.1-P	Field mustard	cytosol	35.21	47.68
CDX70666	Canola	cytosol	42.3	47.66
CDX78666	Canola	cytosol	34.96	47.35
CDY71710	Canola	cytosol, nucleus, plastid	47.19	44.99
Bra021458.1-P	Field mustard	nucleus	46.94	44.76
Bra001046.1-P	Field mustard	nucleus	47.43	43.69
AT3G17717.1	Thale cress	cytosol	12.96	41.73
CDY43235	Canola	cytosol, plastid	47.19	41.68
Bra021271.1-P	Field mustard	cytosol	25.92	32.42
CDY49835	Canola	cytosol	25.43	31.8
CDY63462	Canola	plastid	10.27	27.27
CDY33352	Canola	plastid	10.27	27.27
CDY06772	Canola	nucleus	9.29	23.31
CDX99815	Canola	cytosol	10.27	22.83
CDY17081	Canola	cytosol	10.27	22.46

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	InterPro:AdoMetDC_leader
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	PFAM:PF01536	PFAM:PF08132	PIRSF:PIRSF001355
ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	EnsemblPlantsGene:TraesCS2D01G352900	EnsemblPlants:TraesCS2D01G352900.1	:	:

Description

No Description!

Coordinates

chr2D:+:451287450..451288993

Molecular Weight (calculated)

44715.2 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.061

Length

409 amino acids

Sequence
(BLAST)

001: MYEAPLGYSI EDVRPAGGAK KFSAAYSNGY EKRLEITFSE ASIFADPHGR GLRALSRAQI DSVLDLARCT IVSELSNKDF DSYVLSESSL FIYSQKIVIK
101: TCGTTMLLLT IPRILELAEE LCMPLAAVKY SRGMFIFPGA QPAPHRSFSE EVDVLNRYFG HLKSGGNAYV IGDPAKPGQK WHIYYATEQP EQPMVTLEMC
201: MTGLDKKKAS VFFKTQADGH VSCAKEMTKL SGISDIIPEM EVCDFDFEPC GYSMNAINGS AVSTIHVTPE DGFSYASYEV MGMDASALAY GDIVKRVLRC
301: FGPSEFSVAV TIFGGRGHAA TWGKKLEAEA YDCNNVVEQE LPCGGVLIYQ SFAANEEVAV SAGSPRSVFH CFEAESVQSH PLVKEGKLAN LLAWRAEEDS
401: LEEGAVLCE

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.