CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021271.1-P	Field mustard	cytosol	96.64	96.64
AT3G17717.1	Thale cress	cytosol	19.27	49.61
CDY71278	Canola	cytosol	42.51	38.29
CDY57536	Canola	cytosol	42.2	37.91
CDX74257	Canola	cytosol	42.51	37.77
CDX91992	Canola	cytosol	41.9	37.33
CDY26478	Canola	cytosol	40.37	35.97
CDX78666	Canola	cytosol	32.72	35.43
CDX69487	Canola	cytosol	39.14	34.78
CDX70666	Canola	cytosol	38.23	34.44
CDY71710	Canola	cytosol, nucleus, plastid	42.2	32.17
CDY13929	Canola	cytosol	33.03	31.21
CDX92572	Canola	cytosol	33.03	31.21
CDX70856	Canola	cytosol	33.03	31.12
CDX88906	Canola	cytosol	32.72	30.84
GSMUA_Achr9P18460_001	Banana	cytosol	39.14	30.12
CDY43235	Canola	cytosol, plastid	42.2	29.81
Zm00001d020543_P001	Maize	cytosol	34.86	29.08
CDY47189	Canola	cytosol	30.58	28.74
TraesCS6B01G249000.1	Wheat	cytosol	33.95	28.61
EER98924	Sorghum	cytosol	34.56	28.61
Os09t0424300-03	Rice	cytosol	34.25	28.57
HORVU6Hr1G056110.1	Barley	cytosol	33.64	28.28
Zm00001d051056_P001	Maize	plastid	33.95	28.1
TraesCS6D01G202500.1	Wheat	cytosol	33.33	28.09
TraesCS6A01G219500.1	Wheat	cytosol	33.03	27.84
EES05409	Sorghum	plastid	33.64	27.64
TraesCS2B01G372900.1	Wheat	cytosol	33.03	27.62
Os02t0611200-01	Rice	cytosol	33.33	27.59
TraesCS5A01G221200.1	Wheat	cytosol	33.03	27.41
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	32.72	27.3
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	32.72	27.3
Os04t0498600-01	Rice	cytosol	33.03	27.14
Zm00001d003157_P001	Maize	cytosol	32.72	26.75
Zm00001d025773_P002	Maize	cytosol, plastid	32.11	26.72
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.03	26.02
TraesCS2D01G352900.1	Wheat	cytosol	31.8	25.43
HORVU5Hr1G064040.8	Barley	cytosol	33.03	24.43
HORVU2Hr1G086140.5	Barley	cytosol	33.03	24.0
OQU81878	Sorghum	cytosol	32.11	23.08
CDY54323	Canola	cytosol, nucleus, plastid	6.73	19.82
CDX85819	Canola	cytosol	7.03	17.97
CDY63462	Canola	plastid	5.5	11.69
CDY33352	Canola	plastid	5.5	11.69
CDY06772	Canola	nucleus	5.5	11.04
CDX99815	Canola	cytosol	5.81	10.33
CDY17081	Canola	cytosol	5.81	10.16
CDX84130	Canola	cytosol	3.06	8.0

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:A0A078IG00
UniProt:A0A078IG00	EnsemblPlants:CDY49835	ProteinID:CDY49835	ProteinID:CDY49835.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00093897001	PFAM:PF01536	PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	MetaCyc:PWY-6834
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniPathway:UPA00331	UniParc:UPI0004EF2160
SEG:seg	:	:	:	:	:

Description

BnaC01g34670DBnaC01g34670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG00]

Coordinates

chrLK032862:+:77820..78803

Molecular Weight (calculated)

37162.6 Da

IEP (calculated)

5.704

GRAVY (calculated)

-0.387

Length

327 amino acids

Sequence
(BLAST)

001: MTTDERFEGV EKRLEIVFSP TAGKLREKLT EKLLEQILKD VKCHIVSRKL EEKVDANLLS TSSCFVYDDR VIVKTCGETE IFKCMESLMG ITDHQNVVSV
101: VYTRGGFFWP ERQPFPHNDD IEENKEFLKL LEKLTKLKPM KALCMGTGNK KWHVLGGFSG DSLTSQGDFV TVEMSMRGLD REKAKVFYEK ENVTKTTMTE
201: KSGICYIFPN AIIDAHAFDK CGYSMNGIEG KGISTIHVSP EDEGSFASFE SFGYDFKNEK KFEHVIPTVL KCFSPKQFTM TVYSTVPLEG NEPELKVDLK
301: GYKCLEEKIH KLDNGGSVVY QSFEFEA

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.