CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051056_P001	Maize	plastid	85.43	86.08
Os02t0611200-01	Rice	cytosol	78.89	79.49
TraesCS6B01G249000.1	Wheat	cytosol	75.38	77.32
TraesCS6A01G219500.1	Wheat	cytosol	74.87	76.8
TraesCS6D01G202500.1	Wheat	cytosol	74.87	76.8
HORVU6Hr1G056110.1	Barley	cytosol	74.87	76.61
GSMUA_Achr9P13400_001	Banana	cytosol	62.06	68.61
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	66.83	67.17
OQU81878	Sorghum	cytosol	74.87	65.49
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	62.06	64.49
GSMUA_Achr3P04790_001	Banana	cytosol	59.8	63.81
EER98924	Sorghum	cytosol	63.07	63.54
Solyc01g010050.2.1	Tomato	cytosol	50.5	55.22
PGSC0003DMT400026053	Potato	cytosol	50.0	54.97
PGSC0003DMT400041339	Potato	cytosol	49.75	54.55
AT3G25570.2	Thale cress	cytosol	47.74	54.44
Solyc02g089610.1.1	Tomato	cytosol	49.5	54.42
VIT_11s0037g00950.t01	Wine grape	cytosol	52.76	54.26
PGSC0003DMT400019451	Potato	cytosol	48.99	54.17
Solyc05g010420.1.1	Tomato	cytosol	48.49	53.61
AT5G15950.2	Thale cress	cytosol	46.73	51.38
Bra008662.1-P	Field mustard	cytosol	47.24	51.09
CDY71278	Canola	cytosol	46.48	50.96
Bra039176.1-P	Field mustard	cytosol	46.48	50.82
CDX91992	Canola	cytosol	46.73	50.68
Bra006334.1-P	Field mustard	cytosol	38.44	50.66
KRH02991	Soybean	cytosol	45.48	50.56
CDX74257	Canola	cytosol	46.73	50.54
CDY26478	Canola	cytosol	46.48	50.41
CDX78666	Canola	cytosol	38.19	50.33
CDY57536	Canola	cytosol	45.98	50.27
CDX69487	Canola	cytosol	46.48	50.27
AT3G02470.1	Thale cress	cytosol	45.98	50.0
CDX70666	Canola	cytosol	44.97	49.31
Bra021458.1-P	Field mustard	nucleus	46.48	43.12
CDY71710	Canola	cytosol, nucleus, plastid	46.48	43.12
Bra001046.1-P	Field mustard	nucleus	46.98	42.12
AT3G17717.1	Thale cress	cytosol	13.07	40.94
CDY43235	Canola	cytosol, plastid	46.73	40.17
Bra021271.1-P	Field mustard	cytosol	28.14	34.25
CDY49835	Canola	cytosol	27.64	33.64
CDY63462	Canola	plastid	7.54	19.48
CDY33352	Canola	plastid	7.29	18.83
CDY06772	Canola	nucleus	7.54	18.4
CDX99815	Canola	cytosol	7.29	15.76
CDY17081	Canola	cytosol	7.29	15.51

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:C5XXB2
EnsemblPlants:EES05409	ProteinID:EES05409	ProteinID:EES05409.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	PFAM:PF01536	PIRSF:PIRSF001355
ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	EnsemblPlantsGene:SORBI_3004G211900	SUPFAM:SSF56276	unigene:Sbi.840	TIGRFAMs:TIGR00535	UniParc:UPI0001A852D6
RefSeq:XP_002452433.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:56152325..56153873

Molecular Weight (calculated)

43248.3 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.106

Length

398 amino acids

Sequence
(BLAST)

001: MAVLQVAAAA PPPVSAIGFE GYEKRLEISF SEAPVFADPN GRGLRALSRD QIETVLDLAR CTIVSELSNE DFDSYVLSES SLFVYPYKMV IKTCGTTKLL
101: LAIPRILELA KELSLPLSAV KYSRGTFIFP DAQPSPHKNF ADEVAFLNRF FGGLKSGGNA YVIGDSAKPG QKWHVYYASE HPEEPVVTLE MCMTGLDKKK
201: ASVFFKTSAD GYTSCAKEMT KLSGISDIIP EMEICDFDFE PCGYSMNAVH GPAFSTIHVT PEDGFSYASY EVMGFNPGSS SYGDLVKRVL RCFGPVEFSV
301: AVTIFGERDN AKTWGKKLEA EAYACSNMVE QVLPSGGLLI YQSFTATGAA TPGSPRSVLH DFAGDIVKPG DSGEADGPCW EADAVDESEE REVKKMKC

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.