Factsheet for Bra021271.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49835	Canola	cytosol	96.64	96.64
AT3G17717.1	Thale cress	cytosol	18.96	48.82
Bra039176.1-P	Field mustard	cytosol	42.81	38.46
Bra006334.1-P	Field mustard	cytosol	33.03	35.76
Bra008662.1-P	Field mustard	cytosol	39.14	34.78
Bra021458.1-P	Field mustard	nucleus	43.12	32.87
Bra002194.1-P	Field mustard	cytosol	33.95	32.08
Bra001046.1-P	Field mustard	nucleus	43.12	31.76
Bra006485.1-P	Field mustard	cytosol	33.33	31.5
Bra023699.1-P	Field mustard	cytosol	33.03	30.59
GSMUA_Achr9P18460_001	Banana	cytosol	39.45	30.35
Zm00001d020543_P001	Maize	cytosol	35.47	29.59
Os09t0424300-03	Rice	cytosol	35.17	29.34
TraesCS6B01G249000.1	Wheat	cytosol	34.56	29.12
EER98924	Sorghum	cytosol	35.17	29.11
HORVU6Hr1G056110.1	Barley	cytosol	34.25	28.79
TraesCS6D01G202500.1	Wheat	cytosol	33.95	28.61
Zm00001d051056_P001	Maize	plastid	34.56	28.61
TraesCS6A01G219500.1	Wheat	cytosol	33.64	28.35
EES05409	Sorghum	plastid	34.25	28.14
TraesCS2B01G372900.1	Wheat	cytosol	33.64	28.13
Os02t0611200-01	Rice	cytosol	33.95	28.1
TraesCS5A01G221200.1	Wheat	cytosol	33.64	27.92
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	33.33	27.81
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	33.33	27.81
Os04t0498600-01	Rice	cytosol	33.64	27.64
Zm00001d003157_P001	Maize	cytosol	33.33	27.25
Zm00001d025773_P002	Maize	cytosol, plastid	32.72	27.23
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.64	26.51
TraesCS2D01G352900.1	Wheat	cytosol	32.42	25.92
HORVU5Hr1G064040.8	Barley	cytosol	33.64	24.89
HORVU2Hr1G086140.5	Barley	cytosol	33.64	24.44
OQU81878	Sorghum	cytosol	32.72	23.52

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	EnsemblPlantsGene:Bra021271
EnsemblPlants:Bra021271.1	EnsemblPlants:Bra021271.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006597
GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	UniProt:M4DXM5
PFAM:PF01536	PANTHER:PTHR11570	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniParc:UPI00025453FE	:	:	:	:	:

Description

AT3G02470 (E=5e-064) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase

Coordinates

chrA01:+:22891522..22892505

Molecular Weight (calculated)

37167.4 Da

IEP (calculated)

5.197

GRAVY (calculated)

-0.367

Length

327 amino acids

Sequence
(BLAST)

001: MTTDERFEGV EKRLEIVFSP TAGKLREKLT QNLLEQILTD VKCHIVSHKL EEKVDAYLLS TSSCFVYDDR VIVKTCGETE IFKCMESLMG LTDHQNVVSV
101: VYTRGDFFWP ERQPFPHNDV TEENKEFVKL LEKLTKLKPM KALCMGTGNK KWHVLGGFSG DSLTSQGDFV TVEMSMRGLD REKAKVFYEK ENVTKTTMTE
201: ESGICYIFPN AIIDAHAFDK CGYSMNGIEG KGISTIHVSP EDEGSFASFE SFGYDFKNEK KFEHVIPTVL KCFSPKQFTM TVYSTVPLEG NEPELKVDLK
301: GYKCLEEKIH KLDNGGSVVY QSFEFEA

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.