Factsheet for Os09t0424300-03

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	83.16	83.16
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	82.14	82.14
TraesCS5A01G221200.1	Wheat	cytosol	81.63	81.22
EER98924	Sorghum	cytosol	80.87	80.25
Zm00001d020543_P001	Maize	cytosol	76.79	76.79
HORVU5Hr1G064040.8	Barley	cytosol	82.91	73.53
GSMUA_Achr9P13400_001	Banana	cytosol	63.78	69.44
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	69.39	68.69
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	66.33	67.89
GSMUA_Achr3P04790_001	Banana	cytosol	64.03	67.29
Os02t0611200-01	Rice	cytosol	66.84	66.33
Os04t0498600-01	Rice	cytosol	65.56	64.57
VIT_11s0037g00950.t01	Wine grape	cytosol	55.1	55.81
Solyc01g010050.2.1	Tomato	cytosol	48.98	52.75
AT3G25570.2	Thale cress	cytosol	46.68	52.44
PGSC0003DMT400041339	Potato	cytosol	47.96	51.79
PGSC0003DMT400026053	Potato	cytosol	47.7	51.66
CDY57536	Canola	cytosol	47.96	51.65
CDY71278	Canola	cytosol	47.7	51.52
AT5G15950.2	Thale cress	cytosol	47.45	51.38
Bra039176.1-P	Field mustard	cytosol	47.7	51.37
AT3G02470.1	Thale cress	cytosol	47.96	51.37
PGSC0003DMT400019451	Potato	cytosol	46.94	51.11
CDX74257	Canola	cytosol	47.96	51.09
Solyc02g089610.1.1	Tomato	cytosol	46.94	50.83
CDX91992	Canola	cytosol	47.19	50.41
Solyc05g010420.1.1	Tomato	cytosol	45.92	50.0
KRH02991	Soybean	cytosol	45.41	49.72
CDX69487	Canola	cytosol	46.43	49.46
CDY26478	Canola	cytosol	46.17	49.32
CDX70666	Canola	cytosol	45.66	49.31
Bra008662.1-P	Field mustard	cytosol	46.17	49.18
CDX78666	Canola	cytosol	36.48	47.35
Bra006334.1-P	Field mustard	cytosol	36.22	47.02
Bra021458.1-P	Field mustard	nucleus	47.45	43.36
CDY71710	Canola	cytosol, nucleus, plastid	47.45	43.36
Bra001046.1-P	Field mustard	nucleus	47.96	42.34
AT3G17717.1	Thale cress	cytosol	13.27	40.94
CDY43235	Canola	cytosol, plastid	47.45	40.17
Os05t0141800-00	Rice	cytosol	33.42	36.49
Bra021271.1-P	Field mustard	cytosol	29.34	35.17
CDY49835	Canola	cytosol	28.57	34.25
CDY63462	Canola	plastid	8.16	20.78
CDY33352	Canola	plastid	7.91	20.13
CDY06772	Canola	nucleus	8.16	19.63
CDX99815	Canola	cytosol	7.91	16.85
CDY17081	Canola	cytosol	7.91	16.58

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	EMBL:AK067682
EMBL:AK101535	EMBL:AK102445	ProteinID:BAD26704.1	ProteinID:BAD33432.1	ProteinID:BAF25131.1	ProteinID:BAT08153.1
ProteinID:EAZ44785.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596
GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	EnsemblPlantsGene:Os09g0424300	EnsemblPlants:Os09t0424300-03	PFAM:PF01536	PIRSF:PIRSF001355
ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	UniProt:Q6F4N6	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI00003B7F15	SEG:seg	:

Description

S-adenosylmethionine decarboxylase 1S-adenosylmethionine decarboxylase. (Os09t0424300-01);S-adenosylmethionine decarboxylase. (Os09t0424300-03)

Coordinates

chr9:-:15385723..15388367

Molecular Weight (calculated)

42719.9 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.036

Length

392 amino acids

Sequence
(BLAST)

001: MSMSLADSWG SAPASPIGFE GYEKRLEITL SDAPVFVDPC GRGLRALSRE QIDSFLDLAK CTIVSHLSNK HFDSYVLSES SLFVYPHKVV LKTCGTTKLL
101: LSIPRILELA AELSLPVLSV KYSRGMFIFP GAQPSPHRSF LEEVSVLNSF FGGLKSGGNA YVIGDAFKPK KKWHVYYATE EPEQPMVTLE MCMTGLDAKK
201: AEVFFKDSTD GSCSSAKEMT MFSGISEIIP EMEICDFEFD PCGYSMNGIY GPAVSTIHVT PEEGFSYASY EAMNFNPSSL VYDDLIKKVL ACFCPSDFSV
301: AVTIFGGHGF AKSWAKGAEV DSYMCDDLVE QELPGGGVLM YQSFTAVTPG AVSPRSTLDG WNSDGAEMVA KSKEMSVCWE GEKAAKKKDA DA

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.