Factsheet for TraesCS5D01G228900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	95.92	95.92
TraesCS5A01G221200.1	Wheat	cytosol	94.9	94.42
HORVU5Hr1G064040.8	Barley	cytosol	94.64	83.94
Os09t0424300-03	Rice	cytosol	82.14	82.14
EER98924	Sorghum	cytosol	79.08	78.48
Zm00001d020543_P001	Maize	cytosol	75.26	75.26
GSMUA_Achr9P13400_001	Banana	cytosol	63.27	68.89
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	68.88	68.18
GSMUA_Achr3P04790_001	Banana	cytosol	63.78	67.02
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	64.8	66.32
TraesCS6D01G202500.1	Wheat	cytosol	63.52	64.18
TraesCS2D01G352900.1	Wheat	cytosol	62.76	60.15
VIT_11s0037g00950.t01	Wine grape	cytosol	54.34	55.04
PGSC0003DMT400026053	Potato	cytosol	49.49	53.59
Solyc02g089610.1.1	Tomato	cytosol	48.47	52.49
AT3G25570.2	Thale cress	cytosol	46.43	52.15
AT3G02470.1	Thale cress	cytosol	48.47	51.91
CDY71278	Canola	cytosol	47.96	51.79
CDY57536	Canola	cytosol	47.96	51.65
PGSC0003DMT400019451	Potato	cytosol	47.19	51.39
Bra039176.1-P	Field mustard	cytosol	47.7	51.37
Solyc01g010050.2.1	Tomato	cytosol	47.7	51.37
CDX74257	Canola	cytosol	47.96	51.09
AT5G15950.2	Thale cress	cytosol	46.94	50.83
CDX91992	Canola	cytosol	47.45	50.68
PGSC0003DMT400041339	Potato	cytosol	46.68	50.41
Solyc05g010420.1.1	Tomato	cytosol	46.17	50.28
CDX69487	Canola	cytosol	47.19	50.27
Bra008662.1-P	Field mustard	cytosol	46.94	50.0
CDY26478	Canola	cytosol	46.43	49.59
CDX70666	Canola	cytosol	45.66	49.31
KRH02991	Soybean	cytosol	44.13	48.32
Bra006334.1-P	Field mustard	cytosol	36.99	48.01
CDX78666	Canola	cytosol	36.99	48.01
CDY71710	Canola	cytosol, nucleus, plastid	47.7	43.59
Bra021458.1-P	Field mustard	nucleus	47.7	43.59
Bra001046.1-P	Field mustard	nucleus	48.21	42.57
AT3G17717.1	Thale cress	cytosol	13.52	41.73
CDY43235	Canola	cytosol, plastid	47.7	40.39
Bra021271.1-P	Field mustard	cytosol	27.81	33.33
CDY49835	Canola	cytosol	27.3	32.72
CDY63462	Canola	plastid	7.91	20.13
CDY33352	Canola	plastid	7.65	19.48
CDY06772	Canola	nucleus	7.91	19.02
CDX99815	Canola	cytosol	7.65	16.3
CDY17081	Canola	cytosol	7.65	16.04

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
EnsemblPlantsGene:TraesCS5D01G228900	EnsemblPlants:TraesCS5D01G228900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:+:336223123..336224301

Molecular Weight (calculated)

42181.2 Da

IEP (calculated)

4.493

GRAVY (calculated)

0.047

Length

392 amino acids

Sequence
(BLAST)

001: MEMSLADCWG PAPASPIGFE GYEKRLEITF SDAPVFADPC GRGLRALSRH QIDSFLDLAR CTIVSQLSNK QFDSYVLSES SLFVYSHKVV IKTCGTTKLL
101: LSIPRILELA AELSLPLLSA KYSRGAFIFP GAQPAPHRSF SEEVSVLNGF FGGLKSGGNA YVMGDAFRPK KMWHVYYATE EPEQPMVTLE MCMTGLDAGK
201: AAVFFKNSAD GGCSSAKEMT KVSGISAIIP EMEICDFDFD PCGYSMNGVC GPAASTIHVT PEEGFSYASY EAMNFNPGSL VYSDLIKRVL SCFRPSDFSL
301: AVTIFGGQGF AKSWAADAEV CSYLLEDVVE QELPGGGLLM YQSFSAVAPG AVSPRSTLDD GWSSDGMETA VQGEETCVWG VEKKVAEKGV AA

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.