Factsheet for PGSC0003DMT400041339

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010050.2.1	Tomato	cytosol	94.77	94.51
PGSC0003DMT400019451	Potato	cytosol	80.17	80.83
VIT_01s0010g00990.t01	Wine grape	cytosol	73.0	73.61
KRH75226	Soybean	cytosol	67.77	69.69
KRH71078	Soybean	cytosol	67.22	68.73
AT3G25570.2	Thale cress	cytosol	64.74	67.34
PGSC0003DMT400026053	Potato	cytosol	66.94	67.13
Os02t0611200-01	Rice	cytosol	56.47	51.9
TraesCS6B01G249000.1	Wheat	cytosol	54.82	51.29
HORVU6Hr1G056110.1	Barley	cytosol	54.82	51.16
TraesCS6A01G219500.1	Wheat	cytosol	54.55	51.03
Zm00001d051056_P001	Maize	plastid	55.37	50.89
TraesCS6D01G202500.1	Wheat	cytosol	54.27	50.77
TraesCS2B01G372900.1	Wheat	cytosol	54.55	50.64
Os04t0498600-01	Rice	cytosol	55.37	50.5
Zm00001d003157_P001	Maize	cytosol	54.82	49.75
EES05409	Sorghum	plastid	54.55	49.75
Zm00001d025773_P002	Maize	cytosol, plastid	53.72	49.62
GSMUA_Achr9P18460_001	Banana	cytosol	56.47	48.24
Os09t0424300-03	Rice	cytosol	51.79	47.96
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.82	47.95
Zm00001d020543_P001	Maize	cytosol	50.96	47.19
TraesCS2D01G352900.1	Wheat	cytosol	53.17	47.19
EER98924	Sorghum	cytosol	50.96	46.84
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	50.41	46.68
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	50.41	46.68
TraesCS5A01G221200.1	Wheat	cytosol	50.14	46.19
HORVU2Hr1G086140.5	Barley	cytosol	55.1	44.44
OQU81878	Sorghum	cytosol	55.65	44.4
HORVU5Hr1G064040.8	Barley	cytosol	50.69	41.63
PGSC0003DMT400079043	Potato	cytosol	38.02	41.07
PGSC0003DMT400081774	Potato	cytosol	36.36	40.0

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:102595539	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596
GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	UniProt:M1BB82	PFAM:PF01536	EnsemblPlantsGene:PGSC0003DMG400016009	PGSC:PGSC0003DMG400016009
EnsemblPlants:PGSC0003DMT400041339	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000295C476	RefSeq:XP_006367530.1
SEG:seg	:	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400016009]

Coordinates

chr00:+:23476389..23479180

Molecular Weight (calculated)

39949.5 Da

IEP (calculated)

4.729

GRAVY (calculated)

-0.034

Length

363 amino acids

Sequence
(BLAST)

001: MEVALPVSAI GFEGYEKRLE ISFFEPGLFA DPEGKGLRSL SKAQLDEFLG PAECTIVDSL SNECVDSYVL SESSLFIFPY KIIIKTCGTT KLLLSIPVIL
101: KLADTLLLKV QAVKYTRGSF IFPGAQSFPH RHFSEEVAVL DSYFGNLSSG SKAVILGSPD KLQKWHVYSA SAGPIQTKNP VYTLEMCMTN LDRKKASVFY
201: KTESSSAAQM TIRSGIRKIL PDSAICDFEF DPCGYSMNSI EGAALSTIHV TPEDGFSYAS FEAVGYDLNC SSLGSLVRRV LTCFQPDEFS VALHADDVAC
301: ELLERICSFD VKGYSHAEWS PEELGKGGSI VYQKFTRSSV CGSPKSVLQD CWKEEENEEK EVC

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.