Factsheet for PGSC0003DMT400079043

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g054460.1.1	Tomato	cytosol	92.56	92.01
PGSC0003DMT400081774	Potato	cytosol	76.19	77.58
VIT_05s0020g02370.t01	Wine grape	cytosol	72.02	69.14
KRH50975	Soybean	cytosol	67.86	65.9
KRH02157	Soybean	cytosol	67.26	64.02
KRH11332	Soybean	cytosol	63.99	61.43
KRH20949	Soybean	cytosol	63.69	61.14
CDX88906	Canola	cytosol	58.63	56.77
AT5G18930.1	Thale cress	cytosol	58.63	56.77
CDX70856	Canola	cytosol	57.74	55.91
GSMUA_Achr3P22890_001	Banana	cytosol	55.36	55.52
Bra023699.1-P	Field mustard	cytosol	58.04	55.24
Bra002194.1-P	Field mustard	cytosol	56.85	55.2
Bra006485.1-P	Field mustard	cytosol	56.85	55.2
CDX92572	Canola	cytosol	56.85	55.2
CDY13929	Canola	cytosol	56.55	54.91
GSMUA_Achr11P...	Banana	cytosol	54.76	53.8
CDY47189	Canola	cytosol	54.76	52.87
Os05t0141800-00	Rice	cytosol	45.83	42.9
PGSC0003DMT400026053	Potato	cytosol	41.67	38.67
PGSC0003DMT400019451	Potato	cytosol	41.37	38.61
PGSC0003DMT400041339	Potato	cytosol	41.07	38.02

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:102606123	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596
GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	UniProt:M1D157	PFAM:PF01536	EnsemblPlantsGene:PGSC0003DMG400030766	PGSC:PGSC0003DMG400030766
EnsemblPlants:PGSC0003DMT400079043	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1	InterPro:S-AdoMet_deCO2ase_CS
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000294B5C3	RefSeq:XP_006356688.1
SEG:seg	:	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400030766]

Coordinates

chr6:-:40795642..40797418

Molecular Weight (calculated)

37827.3 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.096

Length

336 amino acids

Sequence
(BLAST)

001: MAASGFEGFE KRLELHFSGD DPVIEMGGFR QLDFDSLEQV LHAVQCTVVS AVSNQYFDSY VLSESSLFVY PTKIIIKTCG TTQLLKSIRP FIHFVCQMGL
101: IITECRYTRG NYIFPKAQPY PHTSFKEEIS YLQDQLPNHL CYRKASVMPS KFTSHSWHVF CACDKFYPIP IPNDRYTVEI CMTDLDRVLA RKFFKNPDTT
201: GKQMTEVTGI GEIIPSALIC EFAFDPCGYS MNGIDGDRYS TIHVTPEDGF SYASYECVGS IYDEDDIGRI LKKVVQVFRP GTMSVSTTCS SSSSEICTRI
301: VKAVEPLGMK RRSCTIDEFP AAGTVVFQTF TLTGNR

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.