Factsheet for PGSC0003DMT400081774

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080380.2.1	Tomato	cytosol	97.88	97.88
PGSC0003DMT400079043	Potato	cytosol	77.58	76.19
VIT_05s0020g02370.t01	Wine grape	cytosol	73.94	69.71
KRH50975	Soybean	cytosol	69.39	66.19
KRH02157	Soybean	cytosol	69.09	64.59
KRH11332	Soybean	cytosol	66.97	63.14
KRH20949	Soybean	cytosol	66.67	62.86
AT5G18930.1	Thale cress	cytosol	63.03	59.94
Bra002194.1-P	Field mustard	cytosol	61.52	58.67
CDY13929	Canola	cytosol	60.61	57.8
CDX92572	Canola	cytosol	60.61	57.8
CDX88906	Canola	cytosol	60.3	57.35
CDX70856	Canola	cytosol	59.7	56.77
Bra023699.1-P	Field mustard	cytosol	60.61	56.66
Bra006485.1-P	Field mustard	cytosol	59.09	56.36
GSMUA_Achr3P22890_001	Banana	cytosol	56.06	55.22
CDY47189	Canola	cytosol	56.97	54.02
GSMUA_Achr11P...	Banana	cytosol	55.76	53.8
Os05t0141800-00	Rice	cytosol	46.36	42.62
PGSC0003DMT400026053	Potato	cytosol	42.42	38.67
PGSC0003DMT400019451	Potato	cytosol	41.82	38.33
PGSC0003DMT400041339	Potato	cytosol	40.0	36.36

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:102596192	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	UniProt:M1D517	PFAM:PF01536	EnsemblPlantsGene:PGSC0003DMG400032117
PGSC:PGSC0003DMG400032117	EnsemblPlants:PGSC0003DMT400081774	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1
InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000295AB6E
RefSeq:XP_006365286.1	:	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400032117]

Coordinates

chr1:-:60966087..60967367

Molecular Weight (calculated)

37311.6 Da

IEP (calculated)

4.844

GRAVY (calculated)

-0.078

Length

330 amino acids

Sequence
(BLAST)

001: MAVSGFEGFE KRLELHFSGD DPIIRMGGLR QLDFESIEEI LNAVQCTVVS AVGNQYFDSY VLSESSLFVY STKIIIKTCG TTQLLKSILP LIQFTSELGF
101: IMSECRYTRG NFIFPKAQPY PHTNFNDEIF YLQEQLPIHL CYRKASVMPS KFISHSWHVF TACNEEPNND LFTIEVCMTE LDRVLARKFF KHPNMASNEM
201: TEVTGISEIN PNALICDFVF DPCGYSMNGI DGDRYSTIHV TPEDGFSYAS YECVGSIYDD PNDIINILKK VVQVFRPGTM SISTTSTSNE VWTRIAKAVE
301: PLGMKCRSCT MDDFPSTGSV VFQTFTSCRK

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.