Factsheet for Solyc01g080380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081774	Potato	cytosol	97.88	97.88
Solyc06g054460.1.1	Tomato	cytosol	73.64	71.89
VIT_05s0020g02370.t01	Wine grape	cytosol	73.94	69.71
KRH50975	Soybean	cytosol	68.48	65.32
KRH02157	Soybean	cytosol	68.48	64.02
KRH11332	Soybean	cytosol	67.27	63.43
KRH20949	Soybean	cytosol	66.97	63.14
AT5G18930.1	Thale cress	cytosol	63.03	59.94
Bra002194.1-P	Field mustard	cytosol	61.52	58.67
CDY13929	Canola	cytosol	60.61	57.8
CDX92572	Canola	cytosol	60.61	57.8
CDX88906	Canola	cytosol	60.61	57.64
CDX70856	Canola	cytosol	59.7	56.77
Bra006485.1-P	Field mustard	cytosol	59.39	56.65
Bra023699.1-P	Field mustard	cytosol	60.3	56.37
GSMUA_Achr3P22890_001	Banana	cytosol	55.76	54.93
GSMUA_Achr11P...	Banana	cytosol	55.45	53.51
CDY47189	Canola	cytosol	56.06	53.16
Os05t0141800-00	Rice	cytosol	46.36	42.62
Solyc05g010420.1.1	Tomato	cytosol	41.52	38.06
Solyc02g089610.1.1	Tomato	cytosol	41.21	37.57
Solyc01g010050.2.1	Tomato	cytosol	39.39	35.71

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	UniProt:K4AXT2	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF1	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	EnsemblPlantsGene:Solyc01g080380.2
EnsemblPlants:Solyc01g080380.2.1	TIGRFAMs:TIGR00535	UniParc:UPI0002762343	:	:	:

Description

No Description!

Coordinates

chr1:+:79625044..79626143

Molecular Weight (calculated)

37320.5 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.092

Length

330 amino acids

Sequence
(BLAST)

001: MAVSGFEGFE KRLELHFSGD DPIIRMGGLR QLDFESIEEI LNAVQCTVVS AVGNQYFDSY VLSESSLFVY STKIIIKTCG TTQLLKSILP LIQFTSELGF
101: MMSECRYTRG NFIFPKSQPY PHTNFNDEIF YLQQQLPIHL CYRKASVMPS KFISHSWHVF TACNEESNND LFTVEVCMTE LDRVLARKFF KHPNMASNEM
201: TEVTGISDIN PNALICDFVF DPCGYSMNGI DGDRYSTIHV TPEDGFSYAS YECVGSIYDD PNDIINILKK VVQVFRPGTM SISTTSTTNE VWTRIAKAVE
301: PLGMKCRSCT MDDFPSTGSV VFQTFTSCRK

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.