Factsheet for GSMUA_Achr3P22890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	81.49	79.82
VIT_05s0020g02370.t01	Wine grape	cytosol	61.19	58.57
KRH50975	Soybean	cytosol	59.7	57.8
PGSC0003DMT400081774	Potato	cytosol	55.22	56.06
KRH02157	Soybean	cytosol	58.81	55.81
Solyc01g080380.2.1	Tomato	cytosol	54.93	55.76
PGSC0003DMT400079043	Potato	cytosol	55.52	55.36
CDX88906	Canola	cytosol	57.31	55.33
CDX92572	Canola	cytosol	57.01	55.2
CDY13929	Canola	cytosol	56.12	54.34
KRH11332	Soybean	cytosol	56.42	54.0
Bra002194.1-P	Field mustard	cytosol	55.52	53.76
AT5G18930.1	Thale cress	cytosol	55.52	53.6
Solyc06g054460.1.1	Tomato	cytosol	53.73	53.25
Bra006485.1-P	Field mustard	cytosol	54.63	52.89
CDX70856	Canola	cytosol	54.63	52.74
KRH20949	Soybean	cytosol	54.93	52.57
Bra023699.1-P	Field mustard	cytosol	54.63	51.84
Os05t0141800-00	Rice	cytosol	55.22	51.53
CDY47189	Canola	cytosol	50.45	48.56
GSMUA_Achr9P13400_001	Banana	cytosol	38.81	36.11
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	39.1	34.2
GSMUA_Achr3P04790_001	Banana	cytosol	37.91	34.05
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	39.7	33.59
GSMUA_Achr9P18460_001	Banana	cytosol	40.9	32.24

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597
GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0016831	EnsemblPlantsGene:GSMUA_Achr3G22890_001	EnsemblPlants:GSMUA_Achr3P22890_001	EnsemblPlants:GSMUA_Achr3T22890_001	UniProt:M0SH05	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000295CE0C	SEG:seg	:

Description

Putative S-adenosylmethionine decarboxylase proenzyme 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22890_001]

Coordinates

chr3:+:23746642..23747649

Molecular Weight (calculated)

36512.4 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.073

Length

335 amino acids

Sequence
(BLAST)

001: MAVSGFEGFE KRLELHFSGN DPLGLRRLRC DALAQVLDAV QCTVVSAVGN RYFDAYILSE SSLFVYPQKM VLKTCGTTQL LRSVPCLLRH TADLGLRLRA
101: CRFSRGSFIF PRAQPFPHTS FAEEALYLEE RLPPSLCFRR GCVLPSASSH SWHVYAAADD DEYVAAASPS TFTVEVCMTE LDRSLARGFF RRKGDERSGD
201: AAGVDMTDLT GIGGISPRAL LCGFAFDPCG YSMNGLDRDR YSTIHVTPED GHSYASFECT GGGEVIEWLR RAIGVFRPGE VSVSFCMAEG GDEKQVWSAT
301: SAALEPLGLS CRSQAAEGLP GAGIVTYQTF TARGK

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.