Factsheet for GSMUA_Achr5P24230_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P13400_001	Banana	cytosol	71.97	79.17
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	73.74	76.24
GSMUA_Achr3P04790_001	Banana	cytosol	70.45	74.8
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	68.94	69.64
Os09t0424300-03	Rice	cytosol	68.69	69.39
Os02t0611200-01	Rice	cytosol	69.19	69.37
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	68.18	68.88
TraesCS5A01G221200.1	Wheat	cytosol	67.93	68.27
EER98924	Sorghum	cytosol	67.68	67.85
Os04t0498600-01	Rice	cytosol	68.18	67.84
Zm00001d025773_P002	Maize	cytosol, plastid	66.67	67.18
TraesCS6D01G202500.1	Wheat	cytosol	65.66	67.01
TraesCS6B01G249000.1	Wheat	cytosol	65.66	67.01
TraesCS2B01G372900.1	Wheat	cytosol	66.16	67.01
EES05409	Sorghum	plastid	67.17	66.83
Zm00001d051056_P001	Maize	plastid	66.16	66.33
Zm00001d003157_P001	Maize	cytosol	66.67	66.0
TraesCS6A01G219500.1	Wheat	cytosol	64.39	65.72
Zm00001d020543_P001	Maize	cytosol	64.65	65.31
HORVU6Hr1G056110.1	Barley	cytosol	64.14	65.3
TraesCS2D01G352900.1	Wheat	cytosol	64.39	62.35
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.15	62.17
HORVU5Hr1G064040.8	Barley	cytosol	67.68	60.63
OQU81878	Sorghum	cytosol	67.17	58.46
VIT_11s0037g00950.t01	Wine grape	cytosol	56.82	58.14
HORVU2Hr1G086140.5	Barley	cytosol	65.15	57.33
KRH02991	Soybean	cytosol	46.97	51.96
GSMUA_Achr9P18460_001	Banana	cytosol	46.46	43.29
GSMUA_Achr3P22890_001	Banana	cytosol	33.59	39.7
GSMUA_Achr11P...	Banana	cytosol	33.33	38.6

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597
GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0016831	EnsemblPlantsGene:GSMUA_Achr5G24230_001	EnsemblPlants:GSMUA_Achr5P24230_001	EnsemblPlants:GSMUA_Achr5T24230_001	UniProt:M0T198	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000296CD9C	SEG:seg	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:GMGC_GENE;Acc:GSMUA_Achr5G24230_001]

Coordinates

chr5:+:25676240..25677658

Molecular Weight (calculated)

43255.5 Da

IEP (calculated)

5.417

GRAVY (calculated)

-0.119

Length

396 amino acids

Sequence
(BLAST)

001: MTFSMGGSPH PPPVSPIGFE GYEKRLEITF SEAPIFVDPQ GRGLRAISRA QIDSILDLAR CTIVSQLSNK DFDSYVLSES SLFVYPYKII LKTCGTTKLL
101: LSIPRILDLA ADLSLSVLSA KYSRGTFIFP GAQPSPHRSF SEEVSVLNGF FGSLKSGGNA YVIGDPSMPN RKWHIYYATQ KPELPLVTLE MCMTGLDAER
201: ASIFFKNSVD GHNSSANEMT KLSGISDIIP EMEICDFDFE PCGYSMNGIH GPALSTIHVT PEDGFSYASY EAMGFNPHSL KYHDLVERVL RCFGPSEFSV
301: AVTIFGGRGL AATWAKKVDL HGYACNDMVE QELPGDGLLV YQTFAASTAT AESPRSILHH WEGVTLENAG KDGKGGVFSE REVLVEKGGK DEKGRL

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.