Factsheet for Zm00001d025773_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003157_P001	Maize	cytosol	85.75	84.25
Os04t0498600-01	Rice	cytosol	78.88	77.89
TraesCS2B01G372900.1	Wheat	cytosol	76.34	76.73
OQU81878	Sorghum	cytosol	87.28	75.38
TraesCS2D01G352900.1	Wheat	cytosol	75.06	72.13
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	75.83	71.81
Zm00001d051056_P001	Maize	plastid	71.25	70.89
GSMUA_Achr9P13400_001	Banana	cytosol	63.1	68.89
HORVU2Hr1G086140.5	Barley	cytosol	76.34	66.67
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	67.18	66.67
GSMUA_Achr3P04790_001	Banana	cytosol	61.58	64.88
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	61.83	63.45
Zm00001d020543_P001	Maize	cytosol	62.6	62.76
AT3G25570.2	Thale cress	cytosol	49.36	55.59
Solyc01g010050.2.1	Tomato	cytosol	50.13	54.12
VIT_11s0037g00950.t01	Wine grape	cytosol	53.18	54.01
PGSC0003DMT400041339	Potato	cytosol	49.62	53.72
Solyc02g089610.1.1	Tomato	cytosol	48.85	53.04
PGSC0003DMT400019451	Potato	cytosol	48.35	52.78
Solyc05g010420.1.1	Tomato	cytosol	48.09	52.5
PGSC0003DMT400026053	Potato	cytosol	48.35	52.49
CDY71278	Canola	cytosol	47.07	50.96
KRH02991	Soybean	cytosol	46.31	50.84
AT5G15950.2	Thale cress	cytosol	46.82	50.83
AT3G02470.1	Thale cress	cytosol	47.07	50.55
CDY57536	Canola	cytosol	46.56	50.27
CDX74257	Canola	cytosol	47.07	50.27
CDX91992	Canola	cytosol	46.56	49.86
Bra008662.1-P	Field mustard	cytosol	46.56	49.73
Bra039176.1-P	Field mustard	cytosol	46.06	49.73
CDY26478	Canola	cytosol	45.8	49.05
CDX69487	Canola	cytosol	45.8	48.91
CDX70666	Canola	cytosol	45.04	48.76
Bra006334.1-P	Field mustard	cytosol	36.64	47.68
CDX78666	Canola	cytosol	36.39	47.35
Bra021458.1-P	Field mustard	nucleus	46.82	42.89
CDY71710	Canola	cytosol, nucleus, plastid	46.82	42.89
Bra001046.1-P	Field mustard	nucleus	46.82	41.44
AT3G17717.1	Thale cress	cytosol	12.72	39.37
CDY43235	Canola	cytosol, plastid	46.31	39.31
Bra021271.1-P	Field mustard	cytosol	27.23	32.72
CDY49835	Canola	cytosol	26.72	32.11
CDY63462	Canola	plastid	7.63	19.48
CDY33352	Canola	plastid	7.38	18.83
CDY06772	Canola	nucleus	7.63	18.4
CDX99815	Canola	cytosol	7.38	15.76
CDY17081	Canola	cytosol	7.38	15.51

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100282559	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
ProteinID:AQK44542.1	UniProt:B6T8W3	EMBL:BT067755	EMBL:EU961428	GO:GO:0003674	GO:GO:0003824
GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000182CAF3	EnsemblPlantsGene:Zm00001d025773
EnsemblPlants:Zm00001d025773_P002	EnsemblPlants:Zm00001d025773_T002	SEG:seg	:	:	:

Description

S-adenosylmethionine decarboxylase1 S-adenosylmethionine decarboxylase1

Coordinates

chr10:+:129112725..129115716

Molecular Weight (calculated)

42335.4 Da

IEP (calculated)

4.514

GRAVY (calculated)

0.042

Length

393 amino acids

Sequence
(BLAST)

001: MAVLSAAGAP PASAIGFEGY EKRLEITFSE APVFVDPHGS GLRALSRSQI DSVLDLARCT IVSELSNKDF DSYVLSESSL FIYPLKIVIK TCGTTKLLLT
101: IPRILELAEE LSMPLAAVKY SRGTFIFPGA QPAPHRSFSE EVAVLNRYFG GLKSGGNAYV IGDAARPGQK WHIYYATEYP EQPMVNLEMC MTGLDTKKAS
201: VFFKTNADGN TTCAKEMTKL SGISEIIPEM EICDFDFEPC GYSMNAIHGS AFSTIHVTPE DGFSYASYEV MGLDATALSY GDLVKRVLGC FGPSEFSVAV
301: TIFGGRGQAG TWGKELGAEA YDCNNMVEQE LPGGGILIYQ SFCAAEDAVA SSPKSVLRCF DGENAAPFAK DCKLANLVCL EEVGCYRGEG WSA

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.