Factsheet for Solyc02g089610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026053	Potato	cytosol	96.41	96.41
KRH01466	Soybean	cytosol, golgi, nucleus	66.85	67.41
Solyc05g010420.1.1	Tomato	cytosol	66.02	66.39
KRH45175	Soybean	cytosol	65.47	66.02
Solyc01g010050.2.1	Tomato	cytosol	66.02	65.66
Bra008662.1-P	Field mustard	cytosol	63.26	62.23
VIT_14s0083g00580.t01	Wine grape	cytosol	69.61	62.22
AT3G02470.1	Thale cress	cytosol	62.71	62.02
AT5G15950.2	Thale cress	cytosol	61.88	61.88
CDY71278	Canola	cytosol	61.88	61.71
CDX91992	Canola	cytosol	62.43	61.58
CDY26478	Canola	cytosol	62.43	61.58
CDX74257	Canola	cytosol	62.43	61.41
CDX69487	Canola	cytosol	62.15	61.14
CDY57536	Canola	cytosol	61.05	60.71
Bra039176.1-P	Field mustard	cytosol	60.5	60.16
CDX70666	Canola	cytosol	59.67	59.5
Bra006334.1-P	Field mustard	cytosol	49.17	58.94
CDX78666	Canola	cytosol	48.07	57.62
CDY71710	Canola	cytosol, nucleus, plastid	61.88	52.21
Bra021458.1-P	Field mustard	nucleus	61.88	52.21
TraesCS6B01G249000.1	Wheat	cytosol	55.25	51.55
HORVU6Hr1G056110.1	Barley	cytosol	55.25	51.41
Bra001046.1-P	Field mustard	nucleus	62.71	51.13
TraesCS2B01G372900.1	Wheat	cytosol	54.97	50.9
TraesCS6A01G219500.1	Wheat	cytosol	54.42	50.77
Os02t0611200-01	Rice	cytosol	55.25	50.63
TraesCS6D01G202500.1	Wheat	cytosol	53.87	50.26
Zm00001d051056_P001	Maize	plastid	54.14	49.62
Os04t0498600-01	Rice	cytosol	54.42	49.5
EES05409	Sorghum	plastid	54.42	49.5
TraesCS5A01G221200.1	Wheat	cytosol	53.59	49.24
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	53.04	48.98
Zm00001d025773_P002	Maize	cytosol, plastid	53.04	48.85
Zm00001d003157_P001	Maize	cytosol	53.59	48.5
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	52.49	48.47
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.7	47.71
GSMUA_Achr9P18460_001	Banana	cytosol	55.52	47.29
TraesCS2D01G352900.1	Wheat	cytosol	53.31	47.19
Os09t0424300-03	Rice	cytosol	50.83	46.94
Zm00001d020543_P001	Maize	cytosol	50.83	46.94
CDY43235	Canola	cytosol, plastid	59.94	46.87
EER98924	Sorghum	cytosol	51.1	46.84
HORVU2Hr1G086140.5	Barley	cytosol	54.97	44.22
HORVU5Hr1G064040.8	Barley	cytosol	52.49	42.99
OQU81878	Sorghum	cytosol	53.87	42.86
Solyc06g054460.1.1	Tomato	cytosol	39.23	42.01
Solyc01g080380.2.1	Tomato	cytosol	37.57	41.21
CDY63462	Canola	plastid	9.12	21.43
CDY33352	Canola	plastid	8.84	20.78
CDY06772	Canola	nucleus	8.84	19.63
CDX99815	Canola	cytosol	8.56	16.85
CDY17081	Canola	cytosol	8.56	16.58

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
UniProt:K4BCB2	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15
InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	EnsemblPlantsGene:Solyc02g089610.1	EnsemblPlants:Solyc02g089610.1.1
TIGRFAMs:TIGR00535	UniParc:UPI0002768C58	SEG:seg	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:K4BCB2]

Coordinates

chr2:-:51368627..51369715

Molecular Weight (calculated)

39484.8 Da

IEP (calculated)

4.405

GRAVY (calculated)

-0.042

Length

362 amino acids

Sequence
(BLAST)

001: MELPVSAIGF EGYEKRLEIC FFELGNSYGP GCGLRSLSKD QLDEILTPAA CTIVSSLAND EVDSYVLSES SLFVYAYKII IKTCGTTKLL LSIPPILKLA
101: DSLNLKVKSV RYTRGSFIFP GAQPFPHRHF SEEVAVLDTY FGKLGAGSNS YVMGNADKQQ NWHVYSASAE PADANNVNPV YTLEMCMTNL DKKKASVFFK
201: TQSSTAAEMT EVSGIRKILP ESNICDFDFD PCGYSMNAVE GSAISTIHIT PEDGFSYASF EAVGYDFRAV DLSAMIERVL SCFGPAEFSV ALHCDILGKE
301: LYTESGLDII GYVSGEKTTE MLGKGGSLTY LTFSSGGSCG SPRSILNNCW SENEDEEMEK IC

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.