Factsheet for Bra006334.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78666	Canola	cytosol	94.37	94.37
AT5G15950.2	Thale cress	cytosol	86.75	72.38
Bra008662.1-P	Field mustard	cytosol	86.42	70.92
Bra039176.1-P	Field mustard	cytosol	73.84	61.26
Bra021458.1-P	Field mustard	nucleus	78.15	55.01
Bra001046.1-P	Field mustard	nucleus	77.48	52.7
KRH01466	Soybean	cytosol, golgi, nucleus	58.94	49.58
KRH45175	Soybean	cytosol	58.61	49.3
Solyc02g089610.1.1	Tomato	cytosol	58.94	49.17
PGSC0003DMT400026053	Potato	cytosol	58.94	49.17
VIT_14s0083g00580.t01	Wine grape	cytosol	57.28	42.72
TraesCS6A01G219500.1	Wheat	cytosol	50.0	38.92
HORVU6Hr1G056110.1	Barley	cytosol	50.0	38.82
EES05409	Sorghum	plastid	50.66	38.44
TraesCS6D01G202500.1	Wheat	cytosol	49.34	38.4
TraesCS6B01G249000.1	Wheat	cytosol	49.01	38.14
Zm00001d051056_P001	Maize	plastid	49.34	37.72
Os02t0611200-01	Rice	cytosol	49.34	37.72
TraesCS2B01G372900.1	Wheat	cytosol	48.68	37.6
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	48.68	37.5
Os04t0498600-01	Rice	cytosol	49.01	37.19
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	48.01	36.99
Zm00001d020543_P001	Maize	cytosol	47.68	36.73
Zm00001d025773_P002	Maize	cytosol, plastid	47.68	36.64
TraesCS5A01G221200.1	Wheat	cytosol	47.68	36.55
Zm00001d003157_P001	Maize	cytosol	48.34	36.5
Os09t0424300-03	Rice	cytosol	47.02	36.22
EER98924	Sorghum	cytosol	47.35	36.2
TraesCS2D01G352900.1	Wheat	cytosol	47.68	35.21
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	48.34	35.18
GSMUA_Achr9P18460_001	Banana	cytosol	48.01	34.12
HORVU5Hr1G064040.8	Barley	cytosol	49.01	33.48
Bra021271.1-P	Field mustard	cytosol	35.76	33.03
HORVU2Hr1G086140.5	Barley	cytosol	48.68	32.67
OQU81878	Sorghum	cytosol	48.68	32.31
Bra002194.1-P	Field mustard	cytosol	36.09	31.5
Bra023699.1-P	Field mustard	cytosol	36.09	30.88
Bra006485.1-P	Field mustard	cytosol	35.1	30.64

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	EnsemblPlantsGene:Bra006334
EnsemblPlants:Bra006334.1	EnsemblPlants:Bra006334.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006597
GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	UniProt:M4CQ45
PFAM:PF01536	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	UniParc:UPI000253F58D	SEG:seg	:	:

Description

AT5G15950 (E=7e-106) | adenosylmethionine decarboxylase family protein

Coordinates

chrA03:+:3059038..3060025

Molecular Weight (calculated)

33745.7 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.289

Length

302 amino acids

Sequence
(BLAST)

001: MSVSTIGFEG YEKRLEVTFF EPSIFLDTQG LGLRALAKSQ IDEILQPAEC TIVSYLSNDQ LDSYVLSESS LFIFPYKIII KTCLSSVAYL MGKDDETKKW
101: HVYSASSGAK KNNKSNVYTL EMCMTGLDKD KASVFYKNES SSMTDNSGIR KILPQSQICD FEFEPCGYSM NSVEGGAIST IHVTPEDGFS YASFEAVGYD
201: FTTMDLSLLV SRVLTCFEPK QFSVAIHSSI AQKSYYKGLC VELDDYGCRE TTMESLGEER GTVMYQRFEK LGRYCGSPRS TLKCEWSSNS SCTSEDEKEE
301: GA

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.