Factsheet for Os04t0498600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G372900.1	Wheat	cytosol	80.9	82.35
Zm00001d003157_P001	Maize	cytosol	80.65	80.25
Os02t0611200-01	Rice	cytosol	78.64	79.24
Zm00001d025773_P002	Maize	cytosol, plastid	77.89	78.88
TraesCS2D01G352900.1	Wheat	cytosol	78.89	76.77
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	79.65	76.39
OQU81878	Sorghum	cytosol	84.92	74.29
HORVU2Hr1G086140.5	Barley	cytosol	80.15	70.89
GSMUA_Achr9P13400_001	Banana	cytosol	62.31	68.89
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	67.84	68.18
Os09t0424300-03	Rice	cytosol	64.57	65.56
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	62.81	65.27
GSMUA_Achr3P04790_001	Banana	cytosol	60.8	64.88
PGSC0003DMT400019451	Potato	cytosol	50.5	55.83
Solyc01g010050.2.1	Tomato	cytosol	51.01	55.77
Solyc05g010420.1.1	Tomato	cytosol	50.25	55.56
PGSC0003DMT400041339	Potato	cytosol	50.5	55.37
AT3G25570.2	Thale cress	cytosol	48.49	55.3
VIT_11s0037g00950.t01	Wine grape	cytosol	53.52	55.04
Solyc02g089610.1.1	Tomato	cytosol	49.5	54.42
PGSC0003DMT400026053	Potato	cytosol	49.25	54.14
AT5G15950.2	Thale cress	cytosol	46.73	51.38
CDY71278	Canola	cytosol	46.23	50.69
KRH02991	Soybean	cytosol	45.48	50.56
CDY57536	Canola	cytosol	46.23	50.55
Bra039176.1-P	Field mustard	cytosol	46.23	50.55
AT3G02470.1	Thale cress	cytosol	46.23	50.27
Bra008662.1-P	Field mustard	cytosol	46.48	50.27
CDX74257	Canola	cytosol	46.48	50.27
CDX91992	Canola	cytosol	45.98	49.86
CDX69487	Canola	cytosol	45.98	49.73
Bra006334.1-P	Field mustard	cytosol	37.19	49.01
CDX78666	Canola	cytosol	37.19	49.01
CDY26478	Canola	cytosol	44.97	48.77
CDX70666	Canola	cytosol	44.47	48.76
CDY71710	Canola	cytosol, nucleus, plastid	45.98	42.66
Bra021458.1-P	Field mustard	nucleus	45.98	42.66
AT3G17717.1	Thale cress	cytosol	13.57	42.52
Bra001046.1-P	Field mustard	nucleus	46.48	41.67
CDY43235	Canola	cytosol, plastid	45.98	39.52
Os05t0141800-00	Rice	cytosol	31.91	35.38
Bra021271.1-P	Field mustard	cytosol	27.64	33.64
CDY49835	Canola	cytosol	27.14	33.03
CDY63462	Canola	plastid	7.04	18.18
CDY33352	Canola	plastid	6.78	17.53
CDY06772	Canola	nucleus	7.04	17.18
CDX99815	Canola	cytosol	6.78	14.67
CDY17081	Canola	cytosol	6.78	14.44

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	EntrezGene:4336294	MapMan:8.2.1
EMBL:AK067166	EMBL:AK098918	EMBL:AK100589	UniProt:B7ED49	ProteinID:BAF15127.1	ProteinID:BAS89910.1
ProteinID:BAS89911.1	ProteinID:CAD41242.2	ProteinID:CAD41510.3	ProteinID:EAZ14251.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004014	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EMBL:JN944362
EMBL:KY038503	EnsemblPlantsGene:Os04g0498600	EnsemblPlants:Os04t0498600-01	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	UniProt:Q0JC10	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI0000128F52	RefSeq:XP_015635570.1	RefSeq:XP_015635573.1	EMBL:Y07766

Description

S-ADENOSYLMETHIONINE DECARBOXYLASES-adenosylmethionine decarboxylase, Polyamine biosynthesis, Salt and drought stresses, Abiotic stress (Os04t0498600-01);Similar to cDNA clone:J013002M21, full insert sequence. (Os04t0498600-02)

Coordinates

chr4:+:24915054..24918786

Molecular Weight (calculated)

43285.4 Da

IEP (calculated)

4.520

GRAVY (calculated)

-0.051

Length

398 amino acids

Sequence
(BLAST)

001: MGVLSAADPP PVSAIGFEGY EKRLEITFSE APVFADPDGR GLRALSRAQI DSVLDLARCT IVSELSNKDF DSYVLSESSL FIYSDKIVIK TCGTTKLLLT
101: IPRILELAEG LSMPLAAVKY SRGMFIFPSA QPAPHRSFSE EVAVLNRYFG HLKSGGNAYV IGDPAKPGQK WHIYYATQHP EQPMVTLEMC MTGLDKEKAS
201: VFFKTSADGH TSCAKEMTKL SGISDIIPEM EICDFDFEPC GYSMNAIHGS AFSTIHVTPE DGFSYASYEV VGFDASTLAY GDLVKRVLRC FGPSEFSVAV
301: TIFGGHGHAG TWAKELNADA YKCNNMVEQE LPCGGLLIYQ SFDATEDVPV AVGSPKSVLH CFEAENMVNP APVKEGKLGN LLPWGEDALE ENDGVFDE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.