CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71278	Canola	cytosol	95.38	96.69
CDX91992	Canola	cytosol	96.2	96.46
AT3G02470.1	Thale cress	cytosol	93.21	93.72
CDY57536	Canola	cytosol	89.95	90.93
Bra001046.1-P	Field mustard	nucleus	99.18	82.21
CDY71710	Canola	cytosol, nucleus, plastid	95.38	81.82
CDY26478	Canola	cytosol	81.25	81.47
CDX69487	Canola	cytosol	78.26	78.26
CDX70666	Canola	cytosol	76.09	77.14
CDX78666	Canola	cytosol	60.6	73.84
CDY43235	Canola	cytosol, plastid	91.3	72.57
KRH01466	Soybean	cytosol, golgi, nucleus	61.68	63.23
Solyc02g089610.1.1	Tomato	cytosol	61.41	62.43
PGSC0003DMT400026053	Potato	cytosol	61.14	62.15
KRH45175	Soybean	cytosol	60.33	61.84
VIT_14s0083g00580.t01	Wine grape	cytosol	61.68	56.05
Zm00001d020543_P001	Maize	cytosol	51.63	48.47
TraesCS6B01G249000.1	Wheat	cytosol	51.09	48.45
HORVU6Hr1G056110.1	Barley	cytosol	51.09	48.33
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	51.36	48.21
TraesCS6D01G202500.1	Wheat	cytosol	50.82	48.2
EER98924	Sorghum	cytosol	51.63	48.1
Os09t0424300-03	Rice	cytosol	51.09	47.96
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	51.09	47.96
TraesCS6A01G219500.1	Wheat	cytosol	50.54	47.94
Os02t0611200-01	Rice	cytosol	51.36	47.85
TraesCS5A01G221200.1	Wheat	cytosol	51.09	47.72
Zm00001d025773_P002	Maize	cytosol, plastid	50.27	47.07
TraesCS2B01G372900.1	Wheat	cytosol	49.73	46.8
EES05409	Sorghum	plastid	50.54	46.73
Os04t0498600-01	Rice	cytosol	50.27	46.48
Zm00001d051056_P001	Maize	plastid	49.46	46.08
Zm00001d003157_P001	Maize	cytosol	49.73	45.75
GSMUA_Achr9P18460_001	Banana	cytosol	52.17	45.18
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.18	43.61
TraesCS2D01G352900.1	Wheat	cytosol	48.37	43.52
HORVU5Hr1G064040.8	Barley	cytosol	51.36	42.76
CDY49835	Canola	cytosol	37.77	42.51
HORVU2Hr1G086140.5	Barley	cytosol	49.73	40.67
OQU81878	Sorghum	cytosol	50.0	40.44
CDX70856	Canola	cytosol	37.77	40.06
CDX92572	Canola	cytosol	37.5	39.88
CDY13929	Canola	cytosol	36.96	39.31
CDX88906	Canola	cytosol	36.96	39.19
CDY47189	Canola	cytosol	36.96	39.08
CDY63462	Canola	plastid	11.68	27.92
CDY33352	Canola	plastid	11.41	27.27
CDY06772	Canola	nucleus	11.41	25.77
CDY54323	Canola	cytosol, nucleus, plastid	7.61	25.23
CDX85819	Canola	cytosol	8.42	24.22
CDX99815	Canola	cytosol	10.87	21.74
CDY17081	Canola	cytosol	10.87	21.39
CDX84130	Canola	cytosol	5.43	16.0

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:A0A078CBM4
EnsemblPlants:CDX74257	ProteinID:CDX74257	ProteinID:CDX74257.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EnsemblPlantsGene:GSBRNA2T00112041001
PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	MetaCyc:PWY-6834
InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniPathway:UPA00331
UniParc:UPI0004EE1E59	SEG:seg	:	:	:	:

Description

BnaA03g27900D

Coordinates

chrLK031800:-:1970910..1972189

Molecular Weight (calculated)

40592.5 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.282

Length

368 amino acids

Sequence
(BLAST)

001: MALSAIGFEG YEKRLEVSFF EPSFFQDSKG LGLRALTRSQ LDEILTPAAC EIVSSLSNDH LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TKLGLNSVAY LMGNDDENKK WHVYAASSAQ TSSDCNNNVY TLEMCMTGLD KEKASVFYKN
201: ETGGENGSMT DNSGIRKILP KSQICDFEFE PCGYSMNSIE GDAISTIHVT PEDGFSYASF EAVGYDFNTL DLSQLVTRVL SCFEPKQFSV AVHSSVGSNA
301: YKPEISVDLE DYGCRERTFE SLGEESGTVM YQTFEKLGKY CGSPRSTLKC EWSSNNSCSS EDEKDEGI

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.