Factsheet for Os02t0611200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G249000.1	Wheat	cytosol	79.49	80.93
TraesCS6A01G219500.1	Wheat	cytosol	78.99	80.41
TraesCS6D01G202500.1	Wheat	cytosol	78.99	80.41
HORVU6Hr1G056110.1	Barley	cytosol	78.48	79.69
Zm00001d051056_P001	Maize	plastid	78.99	78.99
EES05409	Sorghum	plastid	79.49	78.89
Os04t0498600-01	Rice	cytosol	79.24	78.64
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	69.37	69.19
GSMUA_Achr9P13400_001	Banana	cytosol	63.04	69.17
Os09t0424300-03	Rice	cytosol	66.33	66.84
GSMUA_Achr3P04790_001	Banana	cytosol	63.04	66.76
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	64.56	66.58
PGSC0003DMT400019451	Potato	cytosol	52.15	57.22
Solyc01g010050.2.1	Tomato	cytosol	52.66	57.14
PGSC0003DMT400041339	Potato	cytosol	51.9	56.47
Solyc05g010420.1.1	Tomato	cytosol	51.39	56.39
AT3G25570.2	Thale cress	cytosol	49.62	56.16
VIT_11s0037g00950.t01	Wine grape	cytosol	54.68	55.81
PGSC0003DMT400026053	Potato	cytosol	51.14	55.8
Solyc02g089610.1.1	Tomato	cytosol	50.63	55.25
CDY71278	Canola	cytosol	47.85	52.07
AT5G15950.2	Thale cress	cytosol	47.34	51.66
AT3G02470.1	Thale cress	cytosol	47.59	51.37
CDX74257	Canola	cytosol	47.85	51.36
CDX91992	Canola	cytosol	47.34	50.95
KRH02991	Soybean	cytosol	46.08	50.84
CDY57536	Canola	cytosol	46.84	50.82
Bra039176.1-P	Field mustard	cytosol	46.84	50.82
Bra008662.1-P	Field mustard	cytosol	47.34	50.82
CDY26478	Canola	cytosol	46.33	49.86
CDX69487	Canola	cytosol	46.08	49.46
Bra006334.1-P	Field mustard	cytosol	37.72	49.34
CDX70666	Canola	cytosol	45.32	49.31
CDX78666	Canola	cytosol	36.96	48.34
Bra021458.1-P	Field mustard	nucleus	47.59	43.82
CDY71710	Canola	cytosol, nucleus, plastid	47.59	43.82
Bra001046.1-P	Field mustard	nucleus	47.59	42.34
AT3G17717.1	Thale cress	cytosol	12.91	40.16
CDY43235	Canola	cytosol, plastid	46.84	39.96
Os05t0141800-00	Rice	cytosol	34.18	37.6
Bra021271.1-P	Field mustard	cytosol	28.1	33.95
CDY49835	Canola	cytosol	27.59	33.33
CDY63462	Canola	plastid	7.85	20.13
CDY33352	Canola	plastid	7.59	19.48
CDY06772	Canola	nucleus	7.85	19.02
CDX99815	Canola	cytosol	7.59	16.3
CDY17081	Canola	cytosol	7.59	16.04

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	ProteinID:BAD19232.1
ProteinID:BAD19677.1	ProteinID:BAF09318.1	ProteinID:BAS79716.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EMBL:JF969235	EMBL:JX134100
EnsemblPlantsGene:Os02g0611200	EnsemblPlants:Os02t0611200-01	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF3	UniProt:Q6K9B8	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276
TIGRFAMs:TIGR00535	UniParc:UPI00000A2E1A	SEG:seg	:	:	:

Description

S-ADENOSYLMETHIONINE DECARBOXYLASE 2S-adenosylmethionine decarboxylase, Polyamine biosynthesis, Abiotic stress (Os02t0611200-01);Similar to S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S- adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain]. (Os02t0611200-02);Similar to S-adenosylmethionine decarboxylase 2. (Os02t0611200-03)

Coordinates

chr2:+:24045244..24048276

Molecular Weight (calculated)

43154.3 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.069

Length

395 amino acids

Sequence
(BLAST)

001: MAVLSVADSP PVSAIGFEGY EKRLEITFSE APVFADPNGR GLRALSRAQI DSVLDLARCT IVSELSNEVF DSYVLSESSL FVYPYKIVIK TCGTTKLLLA
101: IPRILELAEE LSLPLEAVKY SRGTFIFPEA QPSPHKNFSE EVAVLNRYFG GLKSGGNAYV IGDPAKPGQK WHVYYATQHP EQPVVTLEMC MTGLDKKKAS
201: VFFKTSADGH TTYAKEMTKL SGISDIIPEM EVCDFDFEPC GYSMNAIHGP AFSTIHVTPE DGFSYASYEV MGFNPASLAY GDLVKRVLRC FGPLEFSVAV
301: TIFGGRNHAG TWAKGLDVGA YSCSNMVEQE LPSGGLLIYQ SFTATAEIAT GSPRSVLHCF ADENTEKAGK MEALYWEDDA VEEIDGTEGK KMRSC

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.