Factsheet for Solyc05g010420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019451	Potato	cytosol	95.83	95.83
Solyc01g010050.2.1	Tomato	cytosol	78.06	77.2
KRH75226	Soybean	cytosol	71.67	73.09
VIT_01s0010g00990.t01	Wine grape	cytosol	72.78	72.78
KRH71078	Soybean	cytosol	71.39	72.39
AT3G25570.2	Thale cress	cytosol	66.67	68.77
Solyc02g089610.1.1	Tomato	cytosol	66.39	66.02
Os02t0611200-01	Rice	cytosol	56.39	51.39
TraesCS6B01G249000.1	Wheat	cytosol	54.72	50.77
TraesCS6A01G219500.1	Wheat	cytosol	54.17	50.26
Os04t0498600-01	Rice	cytosol	55.56	50.25
HORVU6Hr1G056110.1	Barley	cytosol	54.17	50.13
TraesCS6D01G202500.1	Wheat	cytosol	53.89	50.0
TraesCS2B01G372900.1	Wheat	cytosol	53.33	49.1
Zm00001d051056_P001	Maize	plastid	53.61	48.86
EES05409	Sorghum	plastid	53.61	48.49
Zm00001d025773_P002	Maize	cytosol, plastid	52.5	48.09
GSMUA_Achr9P18460_001	Banana	cytosol	56.39	47.76
Zm00001d003157_P001	Maize	cytosol	53.06	47.75
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.17	46.99
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	50.28	46.17
TraesCS2D01G352900.1	Wheat	cytosol	52.22	45.97
Os09t0424300-03	Rice	cytosol	50.0	45.92
TraesCS5A01G221200.1	Wheat	cytosol	50.0	45.69
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	49.44	45.41
EER98924	Sorghum	cytosol	49.44	45.06
Zm00001d020543_P001	Maize	cytosol	48.89	44.9
HORVU2Hr1G086140.5	Barley	cytosol	53.89	43.11
OQU81878	Sorghum	cytosol	53.89	42.64
Solyc01g080380.2.1	Tomato	cytosol	38.06	41.52
Solyc06g054460.1.1	Tomato	cytosol	38.33	40.83
HORVU5Hr1G064040.8	Barley	cytosol	49.72	40.5

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:A5JME7
ProteinID:ABY55854.1	EMBL:EF550528	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276
EnsemblPlantsGene:Solyc05g010420.1	EnsemblPlants:Solyc05g010420.1.1	TIGRFAMs:TIGR00535	UniParc:UPI0001528DFB	SEG:seg	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:A5JME7]

Coordinates

chr5:-:4654381..4655463

Molecular Weight (calculated)

39748.3 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.145

Length

360 amino acids

Sequence
(BLAST)

001: MEMDLPVSAI GFEGFEKRLE ISFVEPGLFA DPNGKGLRSL TKAQLDEILG PAECTIVDNL SNDYVDSYVL SESSLFVYSY KIIIKTCGTT KLLLAIPPIL
101: RLAETLSLKV QDVRYTRGSF IFPGAQSFPH RHFSEEVAVL DGYFGKLAAG SKAVIMGNPD KTQKWHVYSA SAGTVQCNDP VYTLEMCMTG LNREKASVFY
201: KTEESSAAHM TVRSGIRKIL PKSEICDFEF EPCGYSMNSI EGAAVSTIHI TPEDGFSYAS FESVGYDPKT NELGPLVERV LACFEPAEFS IALHADVATK
301: LLEHVCSVDV KGYSLAEWSP EEFGKGGSIV YQKFTRTPYC ESPKSVLKGC WKEEEKEGKE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.