Factsheet for HORVU5Hr1G064040.8

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	83.94	94.64
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	83.26	93.88
TraesCS5A01G221200.1	Wheat	cytosol	83.03	93.15
Os09t0424300-03	Rice	cytosol	73.53	82.91
EER98924	Sorghum	cytosol	71.04	79.49
Zm00001d020543_P001	Maize	cytosol	67.42	76.02
GSMUA_Achr9P13400_001	Banana	cytosol	55.88	68.61
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	60.63	67.68
GSMUA_Achr3P04790_001	Banana	cytosol	57.01	67.56
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	57.92	66.84
HORVU6Hr1G056110.1	Barley	cytosol	55.66	63.24
HORVU2Hr1G086140.5	Barley	cytosol	62.22	61.11
VIT_11s0037g00950.t01	Wine grape	cytosol	48.42	55.3
PGSC0003DMT400026053	Potato	cytosol	43.89	53.59
Solyc02g089610.1.1	Tomato	cytosol	42.99	52.49
AT3G25570.2	Thale cress	cytosol	41.4	52.44
CDY71278	Canola	cytosol	42.76	52.07
AT3G02470.1	Thale cress	cytosol	42.99	51.91
Bra039176.1-P	Field mustard	cytosol	42.53	51.65
Solyc01g010050.2.1	Tomato	cytosol	42.53	51.65
CDY57536	Canola	cytosol	42.53	51.65
CDX74257	Canola	cytosol	42.76	51.36
AT5G15950.2	Thale cress	cytosol	41.86	51.1
CDX91992	Canola	cytosol	42.31	50.95
PGSC0003DMT400019451	Potato	cytosol	41.4	50.83
PGSC0003DMT400041339	Potato	cytosol	41.63	50.69
CDY71710	Canola	cytosol, nucleus, plastid	48.87	50.35
CDX69487	Canola	cytosol	41.86	50.27
Bra021458.1-P	Field mustard	nucleus	48.64	50.12
Bra008662.1-P	Field mustard	cytosol	41.63	50.0
CDY26478	Canola	cytosol	41.4	49.86
Solyc05g010420.1.1	Tomato	cytosol	40.5	49.72
CDX70666	Canola	cytosol	40.72	49.59
Bra006334.1-P	Field mustard	cytosol	33.48	49.01
KRH02991	Soybean	cytosol	39.59	48.88
Bra001046.1-P	Field mustard	nucleus	49.09	48.87
CDX78666	Canola	cytosol	33.26	48.68
CDY43235	Canola	cytosol, plastid	49.09	46.87
AT3G17717.1	Thale cress	cytosol	12.22	42.52
CDY33352	Canola	plastid	12.22	35.06
CDY63462	Canola	plastid	11.99	34.42
Bra021271.1-P	Field mustard	cytosol	24.89	33.64
CDY49835	Canola	cytosol	24.43	33.03
CDX99815	Canola	cytosol	12.22	29.35
CDY17081	Canola	cytosol	12.22	28.88
CDY06772	Canola	nucleus	10.41	28.22

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:A0A287RJ16
EMBL:AK365592	EMBL:AK366331	EMBL:AK376946	InterPro:AdoMetDC_leader	GO:GO:0003674	GO:GO:0003824
GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
EnsemblPlantsGene:HORVU5Hr1G064040	EnsemblPlants:HORVU5Hr1G064040.8	PFAM:PF01536	PFAM:PF08132	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniParc:UPI000B46F2A9	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:495147277..495148907

Molecular Weight (calculated)

47423.3 Da

IEP (calculated)

4.790

GRAVY (calculated)

-0.039

Length

442 amino acids

Sequence
(BLAST)

001: MMSKAGTKSS SSNSMYEAPL GYKIEDVRPA GGIKKFQSAA YSNCALDQME MSLADCWGSA PASPIGFEGY EKRLEITFSD APVFADPCGR GLRALSRQQI
101: DSFLDLARCT IVSQLSNKQF DSYVLSESSL FVYSHKVVIK TCGTTKLLLS IPRILELAAE LSLPLLSAKY SRGTFIFPGA QPAPHRSFSE EASVLNDFFG
201: GLKSGGNAYV MGDAFTPKKM WHVYYATEEP EQPMVTLEMC MTGLDARKAA VFFKNSADGG CSSAKEMTKV SGISAIIPEM EICDFDFDPC GYSMNGVCGP
301: AASTIHVTPE EGFSYASYEA MNFNPGSLVY SDLIKRVLSC FRPSDFSVAV TIFGGHGFAK SWATSAEVGS SYLCDDVVQQ ELPGGGLLMY QSFSAVAPGA
401: VSPRSTLDDG WSSDGMETAV QGEEACVWGV KKKSAGKDVV AA

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.