Factsheet for Bra039176.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57536	Canola	cytosol	95.6	95.6
AT3G02470.1	Thale cress	cytosol	89.84	89.34
Bra021458.1-P	Field mustard	nucleus	92.58	78.55
Bra008662.1-P	Field mustard	cytosol	77.75	76.9
Bra001046.1-P	Field mustard	nucleus	90.11	73.87
Bra006334.1-P	Field mustard	cytosol	61.26	73.84
KRH01466	Soybean	cytosol, golgi, nucleus	60.99	61.84
KRH45175	Soybean	cytosol	59.89	60.72
PGSC0003DMT400026053	Potato	cytosol	60.16	60.5
Solyc02g089610.1.1	Tomato	cytosol	60.16	60.5
VIT_14s0083g00580.t01	Wine grape	cytosol	62.09	55.8
TraesCS6B01G249000.1	Wheat	cytosol	51.92	48.71
TraesCS6D01G202500.1	Wheat	cytosol	51.65	48.45
EER98924	Sorghum	cytosol	52.2	48.1
HORVU6Hr1G056110.1	Barley	cytosol	51.37	48.07
Zm00001d020543_P001	Maize	cytosol	51.65	47.96
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	51.65	47.96
TraesCS6A01G219500.1	Wheat	cytosol	51.1	47.94
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	51.37	47.7
Os09t0424300-03	Rice	cytosol	51.37	47.7
TraesCS5A01G221200.1	Wheat	cytosol	51.1	47.21
Os02t0611200-01	Rice	cytosol	50.82	46.84
EES05409	Sorghum	plastid	50.82	46.48
TraesCS2B01G372900.1	Wheat	cytosol	49.73	46.29
Os04t0498600-01	Rice	cytosol	50.55	46.23
Zm00001d025773_P002	Maize	cytosol, plastid	49.73	46.06
Zm00001d051056_P001	Maize	plastid	49.45	45.57
GSMUA_Achr9P18460_001	Banana	cytosol	53.02	45.41
Zm00001d003157_P001	Maize	cytosol	49.18	44.75
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.18	43.13
TraesCS2D01G352900.1	Wheat	cytosol	48.35	43.03
Bra021271.1-P	Field mustard	cytosol	38.46	42.81
HORVU5Hr1G064040.8	Barley	cytosol	51.65	42.53
Bra023699.1-P	Field mustard	cytosol	39.01	40.23
HORVU2Hr1G086140.5	Barley	cytosol	49.73	40.22
OQU81878	Sorghum	cytosol	49.73	39.78
Bra006485.1-P	Field mustard	cytosol	37.64	39.6
Bra002194.1-P	Field mustard	cytosol	37.64	39.6

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	EnsemblPlantsGene:Bra039176
EnsemblPlants:Bra039176.1	EnsemblPlants:Bra039176.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	UniProt:M4FDK5	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000254757E	SEG:seg	:

Description

AT3G02470 (E=5e-176) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase

Coordinates

chrA05:-:23622133..23623227

Molecular Weight (calculated)

40231.2 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.232

Length

364 amino acids

Sequence
(BLAST)

001: MALSAIGFEG YEKRLEVSFL EPSIFQDTKG LGLRALTRSQ LDQILTPAAC EIVSSLSNDH LDSYVLSESS FFVYPYKVII KTSGTTKLLL SIPPLLELAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TKLGLNSVAY LMGNDDETKK WHVYAASAQS FSDNNNVYTL EMCMTGLDRE KASVFYKNGE
201: TGTMTDNSGI RKILPKSHIC DFEFEPCGYS MNSIEGDAIS TIHVTPEDGF SYASFEAVGY DFNTIDLSQL VTRVLSCFEP KQFSVAVHSS VGVNAYKPEI
301: SVDLDDYGCR ERTFESLGEE SGMVMYQTFE KLGKYCGSPR STLKCEWSSN NSSCSSEDEK DEGI

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.