CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45175	Soybean	cytosol	95.54	95.54
Solyc02g089610.1.1	Tomato	cytosol	67.41	66.85
PGSC0003DMT400026053	Potato	cytosol	67.13	66.57
KRH75226	Soybean	cytosol	65.46	66.57
KRH71078	Soybean	cytosol	65.18	65.92
CDY71278	Canola	cytosol	63.51	62.81
CDX91992	Canola	cytosol	63.79	62.4
AT3G02470.1	Thale cress	cytosol	63.51	62.3
AT5G15950.2	Thale cress	cytosol	62.67	62.15
Bra008662.1-P	Field mustard	cytosol	63.23	61.68
CDX74257	Canola	cytosol	63.23	61.68
CDY26478	Canola	cytosol	62.95	61.58
CDY57536	Canola	cytosol	62.4	61.54
CDX69487	Canola	cytosol	62.95	61.41
Bra039176.1-P	Field mustard	cytosol	61.84	60.99
VIT_14s0083g00580.t01	Wine grape	cytosol	68.25	60.49
CDX70666	Canola	cytosol	60.17	59.5
Bra006334.1-P	Field mustard	cytosol	49.58	58.94
CDX78666	Canola	cytosol	49.3	58.61
Bra021458.1-P	Field mustard	nucleus	63.23	52.91
CDY71710	Canola	cytosol, nucleus, plastid	63.23	52.91
Bra001046.1-P	Field mustard	nucleus	62.67	50.68
GSMUA_Achr9P18460_001	Banana	cytosol	56.82	48.0
CDY43235	Canola	cytosol, plastid	61.56	47.73
KRH02991	Soybean	cytosol	46.24	46.37
KRH20949	Soybean	cytosol	40.67	41.71
KRH02157	Soybean	cytosol	40.95	41.64
KRH11332	Soybean	cytosol	40.39	41.43
KRH50975	Soybean	cytosol	39.55	41.04
CDY63462	Canola	plastid	10.03	23.38
CDY33352	Canola	plastid	9.75	22.73
CDY06772	Canola	nucleus	9.75	21.47
CDX99815	Canola	cytosol	9.47	18.48
CDY17081	Canola	cytosol	9.47	18.18

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100800410	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
UniProt:A0A0R4J5V8	EMBL:ACUP02011515	EnsemblPlantsGene:GLYMA_18G278800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152
GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	ProteinID:KRH01465.1
EnsemblPlants:KRH01466	ProteinID:KRH01466	ProteinID:KRH01466.1	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI0001B63E04	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:56010994..56013915

Molecular Weight (calculated)

39121.1 Da

IEP (calculated)

4.290

GRAVY (calculated)

-0.039

Length

359 amino acids

Sequence
(BLAST)

001: MAGSAIGFEG YEKRLEISFF ENGVFADPGG LGLRALSKDQ LDEILKPAEC TIVASLSNDY VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPVILKLAD
101: ALDIAVKSVR YTRGSFIFPG AQSFPHRSFS EEVSVLDSYF SNLGSGSKAY VMGDPSKSQI WHIYSASAQT KGSSEAVYGL EMCMTGLDKE SASVFFKENT
201: SSAASMTENS GIRKILPQSD ISDFEFDPCG YSMNGIEGSA ISTIHVTPED GFSYASFEAV GYDFNDMALG ELVERILACF CPAEFSVALH IDMHGEKLNK
301: FPLDIKGYYC GERSTEELGV GGAVVYQTFV QGCDGSASPR SILKCCWSED ENEDEVREI

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.