Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26478 | Canola | cytosol | 91.16 | 89.92 |
| Bra008662.1-P | Field mustard | cytosol | 89.5 | 88.04 |
| Bra006334.1-P | Field mustard | cytosol | 72.38 | 86.75 |
| CDX69487 | Canola | cytosol | 87.85 | 86.41 |
| CDX70666 | Canola | cytosol | 84.53 | 84.3 |
| CDX78666 | Canola | cytosol | 69.61 | 83.44 |
| AT3G02470.1 | Thale cress | cytosol | 81.49 | 80.6 |
| AT3G25570.2 | Thale cress | cytosol | 60.5 | 62.75 |
| KRH01466 | Soybean | cytosol, golgi, nucleus | 62.15 | 62.67 |
| KRH45175 | Soybean | cytosol | 61.88 | 62.4 |
| Solyc02g089610.1.1 | Tomato | cytosol | 61.88 | 61.88 |
| PGSC0003DMT400026053 | Potato | cytosol | 61.6 | 61.6 |
| VIT_14s0083g00580.t01 | Wine grape | cytosol | 61.88 | 55.31 |
| TraesCS6A01G219500.1 | Wheat | cytosol | 52.49 | 48.97 |
| TraesCS6D01G202500.1 | Wheat | cytosol | 52.21 | 48.71 |
| TraesCS6B01G249000.1 | Wheat | cytosol | 52.21 | 48.71 |
| HORVU6Hr1G056110.1 | Barley | cytosol | 51.93 | 48.33 |
| Os09t0424300-03 | Rice | cytosol | 51.38 | 47.45 |
| Os02t0611200-01 | Rice | cytosol | 51.66 | 47.34 |
| TraesCS2B01G372900.1 | Wheat | cytosol | 51.1 | 47.31 |
| TraesCS5B01G220000.1 | Wheat | cytosol, nucleus, peroxisome | 51.1 | 47.19 |
| TraesCS5D01G228900.1 | Wheat | cytosol, nucleus, peroxisome | 50.83 | 46.94 |
| Zm00001d025773_P002 | Maize | cytosol, plastid | 50.83 | 46.82 |
| Os04t0498600-01 | Rice | cytosol | 51.38 | 46.73 |
| EES05409 | Sorghum | plastid | 51.38 | 46.73 |
| TraesCS5A01G221200.1 | Wheat | cytosol | 50.83 | 46.7 |
| Zm00001d020543_P001 | Maize | cytosol | 50.55 | 46.68 |
| EER98924 | Sorghum | cytosol | 50.83 | 46.58 |
| AT3G17717.1 | Thale cress | cytosol | 16.3 | 46.46 |
| Zm00001d051056_P001 | Maize | plastid | 50.55 | 46.33 |
| Zm00001d003157_P001 | Maize | cytosol | 50.83 | 46.0 |
| GSMUA_Achr9P18460_001 | Banana | cytosol | 52.49 | 44.71 |
| TraesCS2A01G355400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 50.83 | 44.34 |
| TraesCS2D01G352900.1 | Wheat | cytosol | 49.72 | 44.01 |
| HORVU5Hr1G064040.8 | Barley | cytosol | 51.1 | 41.86 |
| HORVU2Hr1G086140.5 | Barley | cytosol | 51.1 | 41.11 |
| OQU81878 | Sorghum | cytosol | 51.1 | 40.66 |
| AT5G18930.1 | Thale cress | cytosol | 38.95 | 40.63 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.30.360.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | EntrezGene:831452 |
| ProteinID:AED92227.1 | ProteinID:AED92228.1 | EMBL:AF436825 | EMBL:AJ251915 | ArrayExpress:AT5G15950 | EnsemblPlantsGene:AT5G15950 |
| RefSeq:AT5G15950 | TAIR:AT5G15950 | RefSeq:AT5G15950-TAIR-G | EnsemblPlants:AT5G15950.2 | TAIR:AT5G15950.2 | EMBL:AY066030 |
| Unigene:At.27461 | ProteinID:CAB64672.1 | ProteinID:CAC01794.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006557 | GO:GO:0006596 | GO:GO:0006597 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016829 | GO:GO:0016831 | RefSeq:NP_001031888.1 | RefSeq:NP_197099.1 |
| PFAM:PF01536 | PIRSF:PIRSF001355 | PO:PO:0000256 | PO:PO:0000262 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01336 | PANTHER:PTHR11570 | PANTHER:PTHR11570:SF14 |
| UniProt:Q9S7T9 | InterPro:S-AdoMet_deCO2ase_CS | InterPro:S-AdoMet_deCO2ase_core | InterPro:S-AdoMet_decarboxylase | SUPFAM:SSF56276 | TIGRFAMs:TIGR00535 |
| UniParc:UPI0000000D4E | SEG:seg | : | : | : | : |
Description
SAMDC2S-adenosylmethionine decarboxylase proenzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T9]
Coordinates
chr5:+:5206156..5208036
Molecular Weight (calculated)
40012.1 Da
IEP (calculated)
4.669
GRAVY (calculated)
-0.280
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSAIGFEG YEKRLEVTFF EPGLFLDTQG KGLRALAKSQ IDEILQPAEC TIVSSLSNDQ LDSYVLSESS LFIFPYKIVI KTCGTTKLLL SIEPLLRLAG
101: ELSLDVKAVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGHF AKLGLSSVAY LMGNDDETKK WHVYSASSAN SNNKNNVYTL EMCMTGLDKD KASVFYKNES
201: SSAGSMTDNS GIRKILPQSQ ICDFEFEPCG YSMNSIEGDA ISTIHVTPED GFSYASFEAV GYDFTTMDLS HLVSKVLTCF KPKQFSVAVH STVAQKSYDS
301: GLSVDLDDYG CKESTMESLG EERGTVMYQR FEKLGRYCGS PRSTLKCEWS SNSSCNSEDE KE
101: ELSLDVKAVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGHF AKLGLSSVAY LMGNDDETKK WHVYSASSAN SNNKNNVYTL EMCMTGLDKD KASVFYKNES
201: SSAGSMTDNS GIRKILPQSQ ICDFEFEPCG YSMNSIEGDA ISTIHVTPED GFSYASFEAV GYDFTTMDLS HLVSKVLTCF KPKQFSVAVH STVAQKSYDS
301: GLSVDLDDYG CKESTMESLG EERGTVMYQR FEKLGRYCGS PRSTLKCEWS SNSSCNSEDE KE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.