Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006334.1-P | Field mustard | cytosol | 94.37 | 94.37 |
| CDX70666 | Canola | cytosol | 87.75 | 73.0 |
| CDX69487 | Canola | cytosol | 85.43 | 70.11 |
| AT5G15950.2 | Thale cress | cytosol | 83.44 | 69.61 |
| CDY26478 | Canola | cytosol | 83.44 | 68.66 |
| CDY71278 | Canola | cytosol | 75.17 | 62.53 |
| CDX91992 | Canola | cytosol | 73.84 | 60.76 |
| CDX74257 | Canola | cytosol | 73.84 | 60.6 |
| CDY57536 | Canola | cytosol | 72.52 | 60.16 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 74.5 | 52.45 |
| KRH01466 | Soybean | cytosol, golgi, nucleus | 58.61 | 49.3 |
| KRH45175 | Soybean | cytosol | 58.28 | 49.03 |
| Solyc02g089610.1.1 | Tomato | cytosol | 57.62 | 48.07 |
| PGSC0003DMT400026053 | Potato | cytosol | 57.62 | 48.07 |
| CDY43235 | Canola | cytosol, plastid | 72.52 | 47.3 |
| VIT_14s0083g00580.t01 | Wine grape | cytosol | 56.95 | 42.47 |
| TraesCS6A01G219500.1 | Wheat | cytosol | 49.67 | 38.66 |
| HORVU6Hr1G056110.1 | Barley | cytosol | 49.67 | 38.56 |
| EES05409 | Sorghum | plastid | 50.33 | 38.19 |
| TraesCS6D01G202500.1 | Wheat | cytosol | 49.01 | 38.14 |
| TraesCS6B01G249000.1 | Wheat | cytosol | 48.68 | 37.89 |
| Zm00001d051056_P001 | Maize | plastid | 49.34 | 37.72 |
| TraesCS2B01G372900.1 | Wheat | cytosol | 48.34 | 37.34 |
| Os04t0498600-01 | Rice | cytosol | 49.01 | 37.19 |
| TraesCS5D01G228900.1 | Wheat | cytosol, nucleus, peroxisome | 48.01 | 36.99 |
| TraesCS5B01G220000.1 | Wheat | cytosol, nucleus, peroxisome | 48.01 | 36.99 |
| Os02t0611200-01 | Rice | cytosol | 48.34 | 36.96 |
| Os09t0424300-03 | Rice | cytosol | 47.35 | 36.48 |
| Zm00001d020543_P001 | Maize | cytosol | 47.35 | 36.48 |
| EER98924 | Sorghum | cytosol | 47.68 | 36.46 |
| Zm00001d025773_P002 | Maize | cytosol, plastid | 47.35 | 36.39 |
| Zm00001d003157_P001 | Maize | cytosol | 48.01 | 36.25 |
| TraesCS5A01G221200.1 | Wheat | cytosol | 47.02 | 36.04 |
| TraesCS2D01G352900.1 | Wheat | cytosol | 47.35 | 34.96 |
| TraesCS2A01G355400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 48.01 | 34.94 |
| GSMUA_Achr9P18460_001 | Banana | cytosol | 47.68 | 33.88 |
| HORVU5Hr1G064040.8 | Barley | cytosol | 48.68 | 33.26 |
| CDY49835 | Canola | cytosol | 35.43 | 32.72 |
| HORVU2Hr1G086140.5 | Barley | cytosol | 48.34 | 32.44 |
| OQU81878 | Sorghum | cytosol | 48.68 | 32.31 |
| CDX92572 | Canola | cytosol | 36.09 | 31.5 |
| CDY13929 | Canola | cytosol | 35.76 | 31.21 |
| CDX88906 | Canola | cytosol | 35.43 | 30.84 |
| CDX70856 | Canola | cytosol | 35.1 | 30.55 |
| CDY47189 | Canola | cytosol | 33.44 | 29.02 |
| CDY54323 | Canola | cytosol, nucleus, plastid | 8.28 | 22.52 |
| CDY63462 | Canola | plastid | 10.93 | 21.43 |
| CDX85819 | Canola | cytosol | 8.94 | 21.09 |
| CDY33352 | Canola | plastid | 10.6 | 20.78 |
| CDY06772 | Canola | nucleus | 10.6 | 19.63 |
| CDX99815 | Canola | cytosol | 9.93 | 16.3 |
| CDY17081 | Canola | cytosol | 9.93 | 16.04 |
| CDX84130 | Canola | cytosol | 4.97 | 12.0 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.30.360.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | GO:A0A078CNA2 |
| EnsemblPlants:CDX78666 | ProteinID:CDX78666 | ProteinID:CDX78666.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 |
| GO:GO:0006597 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00130089001 | PFAM:PF01536 | ScanProsite:PS01336 | PANTHER:PTHR11570 | PANTHER:PTHR11570:SF14 | MetaCyc:PWY-6834 |
| InterPro:S-AdoMet_deCO2ase_CS | InterPro:S-AdoMet_deCO2ase_core | InterPro:S-AdoMet_decarboxylase | SUPFAM:SSF56276 | UniPathway:UPA00331 | UniParc:UPI0004EE66B6 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g05780D
Coordinates
chrLK031815:+:1726763..1727854
Molecular Weight (calculated)
33731.7 Da
IEP (calculated)
4.499
GRAVY (calculated)
-0.287
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSTIGFEG YEKRLEVTFF EPSIFLDTQG LGLRALAKSQ IDEILQPAEC TIVSYLSNDQ LDSYVLSESS VFIFPYKIII KTCLSSVAYL MGKDDETKKW
101: HVYSASSGAK KNNKSNVYTL EMCMTGLDKD KASVFYKNES SSMTDNSGIR KILPQSQICD FEFEPCGYSM NSVEGGAIST IHVTPEDGFS YASFEAVGYD
201: FTTMDLSLLV SRVLTCFEPK QFSVAIHSSI AQKSYYKGLC VELDDYGCRE TTMESLGEER GTVMYQRFEK LGRYCGSPRS TLKCEWSSNS SCTSEDEKEE
301: GA
101: HVYSASSGAK KNNKSNVYTL EMCMTGLDKD KASVFYKNES SSMTDNSGIR KILPQSQICD FEFEPCGYSM NSVEGGAIST IHVTPEDGFS YASFEAVGYD
201: FTTMDLSLLV SRVLTCFEPK QFSVAIHSSI AQKSYYKGLC VELDDYGCRE TTMESLGEER GTVMYQRFEK LGRYCGSPRS TLKCEWSSNS SCTSEDEKEE
301: GA
001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
Arabidopsis Description
SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.