Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88906 | Canola | cytosol | 92.51 | 92.51 |
| AT5G18930.1 | Thale cress | cytosol | 86.74 | 86.74 |
| CDX92572 | Canola | cytosol | 85.59 | 85.84 |
| CDY13929 | Canola | cytosol | 85.01 | 85.26 |
| CDY47189 | Canola | cytosol | 84.15 | 83.91 |
| VIT_05s0020g02370.t01 | Wine grape | cytosol | 61.67 | 61.14 |
| Solyc01g080380.2.1 | Tomato | cytosol | 56.77 | 59.7 |
| PGSC0003DMT400081774 | Potato | cytosol | 56.77 | 59.7 |
| KRH11332 | Soybean | cytosol | 58.79 | 58.29 |
| KRH20949 | Soybean | cytosol | 58.79 | 58.29 |
| KRH50975 | Soybean | cytosol | 57.93 | 58.09 |
| KRH02157 | Soybean | cytosol | 58.79 | 57.79 |
| PGSC0003DMT400079043 | Potato | cytosol | 55.91 | 57.74 |
| Solyc06g054460.1.1 | Tomato | cytosol | 54.18 | 55.62 |
| GSMUA_Achr11P... | Banana | cytosol | 54.47 | 55.26 |
| GSMUA_Achr3P22890_001 | Banana | cytosol | 52.74 | 54.63 |
| Os05t0141800-00 | Rice | cytosol | 46.4 | 44.85 |
| CDX91992 | Canola | cytosol | 40.92 | 38.69 |
| CDY71278 | Canola | cytosol | 40.06 | 38.29 |
| CDY57536 | Canola | cytosol | 40.06 | 38.19 |
| CDX74257 | Canola | cytosol | 40.06 | 37.77 |
| CDX69487 | Canola | cytosol | 38.9 | 36.68 |
| CDX70666 | Canola | cytosol | 38.04 | 36.36 |
| CDY26478 | Canola | cytosol | 38.33 | 36.24 |
| CDX78666 | Canola | cytosol | 30.55 | 35.1 |
| CDY49835 | Canola | cytosol | 31.12 | 33.03 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 40.06 | 32.4 |
| CDY43235 | Canola | cytosol, plastid | 39.77 | 29.81 |
| CDY54323 | Canola | cytosol, nucleus, plastid | 6.05 | 18.92 |
| CDX85819 | Canola | cytosol | 6.92 | 18.75 |
| CDY63462 | Canola | plastid | 6.92 | 15.58 |
| CDY33352 | Canola | plastid | 6.63 | 14.94 |
| CDY06772 | Canola | nucleus | 6.92 | 14.72 |
| CDX99815 | Canola | cytosol | 6.63 | 12.5 |
| CDY17081 | Canola | cytosol | 6.63 | 12.3 |
| CDX84130 | Canola | cytosol | 4.32 | 12.0 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.30.360.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | GO:A0A078C1H4 |
| EnsemblPlants:CDX70856 | ProteinID:CDX70856 | ProteinID:CDX70856.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 |
| GO:GO:0006139 | GO:GO:0006557 | GO:GO:0006597 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00140751001 | PFAM:PF01536 | PIRSF:PIRSF001355 | ScanProsite:PS01336 |
| PANTHER:PTHR11570 | PANTHER:PTHR11570:SF1 | MetaCyc:PWY-6834 | InterPro:S-AdoMet_deCO2ase_CS | InterPro:S-AdoMet_deCO2ase_core | InterPro:S-AdoMet_decarboxylase |
| SUPFAM:SSF56276 | TIGRFAMs:TIGR00535 | UniPathway:UPA00331 | UniParc:UPI0004EF1D8A | SEG:seg | : |
Description
BnaC03g09400D
Coordinates
chrLK031791:-:2405718..2406990
Molecular Weight (calculated)
39124.4 Da
IEP (calculated)
6.264
GRAVY (calculated)
-0.276
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSGFEGFE KRLELRFFHD NSTTNKNPMG LRLIDFESLD QVLTQVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPFIHLARTL
101: NLTLRACRYS RGSFIFPNSQ PFPYTSFEDE VVIIEESLPK SLRHRKASVM TPSNNPSRAW HVFAASADVE PDERVVVVEV CMTELDRVNA RSFFRRKGDE
201: KNSDSGGKEM TRLSGIDMIN ENAFICDFAF DPCGYSMNGV DGERYSTIHV TPEDGFSYAS FECGLSLYDD DGRGDIAEVL TRAIDVFRPS CVSIATTYGG
301: EDYDHEVTKR VERLLAKKLG LKCRSRLMDE FPGSGTVVFQ SFTPRRR
101: NLTLRACRYS RGSFIFPNSQ PFPYTSFEDE VVIIEESLPK SLRHRKASVM TPSNNPSRAW HVFAASADVE PDERVVVVEV CMTELDRVNA RSFFRRKGDE
201: KNSDSGGKEM TRLSGIDMIN ENAFICDFAF DPCGYSMNGV DGERYSTIHV TPEDGFSYAS FECGLSLYDD DGRGDIAEVL TRAIDVFRPS CVSIATTYGG
301: EDYDHEVTKR VERLLAKKLG LKCRSRLMDE FPGSGTVVFQ SFTPRRR
001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK
Arabidopsis Description
SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.