CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11332	Soybean	cytosol	93.43	93.43
KRH50975	Soybean	cytosol	71.14	71.97
KRH02157	Soybean	cytosol	71.71	71.1
VIT_05s0020g02370.t01	Wine grape	cytosol	68.0	68.0
Solyc01g080380.2.1	Tomato	cytosol	63.14	66.97
PGSC0003DMT400081774	Potato	cytosol	62.86	66.67
PGSC0003DMT400079043	Potato	cytosol	61.14	63.69
Solyc06g054460.1.1	Tomato	cytosol	61.43	63.61
CDX70856	Canola	cytosol	58.29	58.79
AT5G18930.1	Thale cress	cytosol	58.0	58.5
Bra002194.1-P	Field mustard	cytosol	57.71	58.38
Bra006485.1-P	Field mustard	cytosol	57.43	58.09
CDX88906	Canola	cytosol	57.43	57.93
CDY13929	Canola	cytosol	56.57	57.23
CDX92572	Canola	cytosol	56.57	57.23
Bra023699.1-P	Field mustard	cytosol	56.86	56.37
GSMUA_Achr11P...	Banana	cytosol	54.29	55.56
GSMUA_Achr3P22890_001	Banana	cytosol	52.57	54.93
CDY47189	Canola	cytosol	54.0	54.31
Os05t0141800-00	Rice	cytosol	46.0	44.85
KRH01466	Soybean	cytosol, golgi, nucleus	41.71	40.67
KRH45175	Soybean	cytosol	40.86	39.83
KRH71078	Soybean	cytosol	38.86	38.31
KRH75226	Soybean	cytosol	38.57	38.24
KRH02991	Soybean	cytosol	37.71	36.87

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100817029	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
EMBL:ACUP02008330	EnsemblPlantsGene:GLYMA_13G211700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	UniProt:I1M181	EnsemblPlants:KRH20949	ProteinID:KRH20949
ProteinID:KRH20949.1	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1
MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniParc:UPI000233BF23	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:32541959..32543724

Molecular Weight (calculated)

39122.7 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.060

Length

350 amino acids

Sequence
(BLAST)

001: MAFAFSGFEG FEKRLELHFF GDDPTILQLG LRKLSFECIQ QTLEAVQCTV VSAVGNSYFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI TPLIFYAQTH
101: LGLTLSLCRY TRGSFIFPLS QPFPHTSFEH EVTYLETTLP SDLCFRKASI MPSKSSSHAW HVFTATNIPH HHSRALYSER HAYTMEICMT DLDPVLARKF
201: FRRAGDGKTG DSAGKEMTEI TGVDEINPQA LVCDFAFDPC GYSMNGIDGE WYSTIHVTPE DGYSYASFEC VGSVNDDVDI LHVLRKVVQI FRPGTMSVST
301: TSLGSEMWRE VSGAVEPMGM KLRSCAMDQF PDSGSVVFQT FTPLRRKSAH

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.